Rickettsia tillamookensis: H6P87_00720
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Entry
H6P87_00720 CDS
T07505
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rtl
Rickettsia tillamookensis
Pathway
rtl03410
Base excision repair
rtl03430
Mismatch repair
rtl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H6P87_00720 (recJ)
03430 Mismatch repair
H6P87_00720 (recJ)
03440 Homologous recombination
H6P87_00720 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtl03400
]
H6P87_00720 (recJ)
DNA repair and recombination proteins [BR:
rtl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
H6P87_00720 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
H6P87_00720 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H6P87_00720 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QQV75174
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Position
772413..774176
Genome browser
AA seq
587 aa
AA seq
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MKLQASINGKIWQQKLINEDIVTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNL
LPNPFHLLDMEKAVDRTVKAILNNQKICIFADYDVDGATSAALLKNIFRDLNIICDIYVP
DRIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEIL
PDAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMKYLDLV
ALGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRI
NAGGRVGKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEATEIALTQQDSS
LLFIVKEGWHPGVIGIVAGRLKEKFDKPVAVIALNDGIGKASCRSILGIDFGAEIINAKS
KDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISINKLENYKHAEYDIDLTVNSVNF
PLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAIAF
NSVGTSFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDILLRE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaagctacaagcatctataaacggtaaaatctggcaacagaaactgattaacgaagat
atagtcaccgagttatgtcgtagtttcaaaattagtgatttactggctagaatagtatca
ttaagagtaaataatctagaggaagtagaaaattttttgataccgaaaatcaaaaattta
ttacctaatccttttcatctactcgatatggaaaaggctgtagatagaacagttaaagct
attttaaataaccaaaaaatatgtatctttgccgattatgatgtggatggtgctacttca
gccgctttacttaaaaatatttttagagatttaaatataatatgtgatatttatgttcct
gatcgtatagctgaaggatacggtccaactccttttgctatgcaaaaaattaaagataac
ggcacagaattattaattacggttgattgcggtgctatggcacatgaagccctaaaatac
gcaaaagatgttaaccttgatgttatagtaatcgatcatcatatagctacggaaatatta
cctgatgcagtagctatagtaaatccaaatcgtattgatgaaaaaagcgaatataaacat
ttggcagctgtaggagttgctttcttatttgcaactgcaatattatcaaatttaaagaag
caaaattatttcacgcaaacaatgcttcagcctaatctaatgaagtatctagatttagtg
gctcttggtactgtttgcgatatgatgaaattaacaggcttaaatcgtgcatttgtcgca
agcggattgaaagtaatgcaacaaaggcaaaatatagggattaaaacattatatgatatg
gcagggcttaatgaaataccgaaatgctatcatttagggtttattctaggtccgcgtatc
aatgcaggcggtagagtaggaaagtcaagtttaggggctaatctcctatctactagctgt
tctaatgaagcaaataaattagctgaagaacttgaaaaacataataatgagcgtaaagta
attgagttattgatgatagaagaggcaacagaaattgctttaactcaacaagatagtagt
ttattatttatcgtaaaagaaggatggcatccaggtgttataggaatcgttgccggtaga
ttaaaagaaaaatttgataagccggtagcggttatagctttgaatgacggaatcggtaaa
gcttcctgccgttctattttaggtattgatttcggtgctgagattatcaatgctaaaagc
aaagatttgctaatagcaggcggaggtcacgctatggcagcgggttttaccgtcactgct
gaaaaattacaagaattgcagaatttttttaataatgcttttagaattagtataaataaa
ctagaaaattataagcatgcggaatatgatattgatttaacggttaatagtgtgaatttc
cctttaatggaggaattaaacactttagaacctttcggtcaaggaaatcatgagcctata
tttaaattcgatgatttatttgtattaaaagcagatatcgttggaagtaagcatattaaa
tgtatgcttgttccaaataagcgaggctttggtaataaagctttgtctgctattgctttt
aattcggtaggaacttcatttgaagatgttttattaagccctaaagcaaagaatattgct
gcaataggaacgttaaaaaccaataattggcaagataattatactattcaattaattata
aaagatatacttcttagagagtag
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