Rhodococcus triatomae: G4H71_02550
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Entry
G4H71_02550 CDS
T06846
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rtm
Rhodococcus triatomae
Pathway
rtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4H71_02550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtm03021
]
G4H71_02550
03019 Messenger RNA biogenesis [BR:
rtm03019
]
G4H71_02550
Transcription machinery [BR:
rtm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
G4H71_02550
Messenger RNA biogenesis [BR:
rtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
G4H71_02550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
QNG22066
LinkDB
All DBs
Position
complement(543536..545611)
Genome browser
AA seq
691 aa
AA seq
DB search
MTDTELIASPADADVQVTQSPQAGAARSDAVAASAKRADARRGTGLSGMVLAELRALAAE
LGIKGTSGLRKGDLIAAIKERQGQSGGDSTPAPERRERASRAKAPAAAAEAGAPQAPAAA
PRTESAPVAESAEQPSSDEGAADSDQGGGRPRRQRRGSARRAGAPEQGDQAADQGADRQR
PDKQGDKQDGGKQDGPRAEGGRENAGKSDGRDNAGKGDGRDNAGKGDGRDNAGKGDGGSE
QGGNRRERGDRNRNQGNQNQNQGGGPRQDNRNDDDEEGGRGRRGRRFRERRRGRDRGGES
NERDVEIREDDVLQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNLIRKNGLRRGDAIT
GAVRVAREGEQSNQRQKFNPLVRIDTVNGGSIDAAKHRAEFNKLTPLYPNQRLRLETEQN
RLTTRVIDLVMPIGKGQRALIVSPPKAGKTTVLQDIANAIATNNPECHLMVVLVDERPEE
VTDMQRSVKGEVIASTFDRPPSDHTLVSELAIERAKRLVEAGKDVVVLLDSITRLGRAYN
NSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEF
KGTGNAELKLDRKIAERRVFPAVDVNLSSTRKDELLMTPDEFAVVHKLRRVLSGLDSQAA
IDLLVNRLKKTQSNVEFLMQVSKTAPGALDD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggaactcatcgccagccccgcagacgcggacgtgcaggtgacgcaatct
ccccaggccggtgcggcgcgcagtgatgccgtcgcggcctcggccaagcgagcggacgcc
cgtcgtggcacggggctgtccggcatggttctcgccgaactccgtgccctcgccgccgaa
ctcggcatcaagggcacgtccggcctgcgtaagggcgacctgatcgcggccatcaaggaa
cgccagggtcagtccggcggagacagcaccccggcccccgaacgtcgtgagcgggcctcg
cgcgccaaggctcccgctgccgccgccgaggccggtgctccccaggcacccgccgccgcc
ccgcgcaccgagtcggcgccggtcgccgagagtgccgagcagccgtcgtcggacgaaggc
gccgcggactccgaccagggcggtggacgcccccggcgccagcgccgtggatccgcacgc
cgcgcgggtgctcccgagcagggcgatcaggccgcggatcagggtgcggacaggcagcgc
ccggacaagcagggtgacaagcaggacggcggcaagcaggacggcccgagggccgagggc
ggccgcgagaacgccggcaagtccgatggccgcgacaacgccggcaagggtgacggccgg
gacaacgccggcaagggcgacggccgggacaacgccggcaagggcgacggcggctccgag
cagggcggcaaccgtcgcgagcgcggcgaccggaaccgcaaccagggcaatcagaaccag
aaccagggtggcggtcctcgccaggacaaccgcaacgacgacgacgaggaaggcggccgc
gggcgccggggacgtcggttccgtgagcgtcgtcgtgggcgcgatcgtggcggcgagagc
aacgagcgcgacgtcgagattcgtgaggacgatgtcctgcagccggtggccgggatcctc
gacgtgctcgacaactacgccttcgtccgtacctccgggtaccttccggggcccaacgac
gtgtacgtctcgatgaacctgatccgcaagaacggtctgcgccgcggagacgcgatcacc
ggtgcggtccgggttgcgcgagagggcgagcagagcaaccagcggcagaagttcaacccg
ctggtgcgcatcgacactgtcaacggtggcagcatcgacgccgccaagcatcgtgccgag
ttcaacaagctcacgccgctctacccgaaccagcgcctgcggctcgagaccgagcagaac
cgcctgacgacccgtgtcatcgatctggtcatgccgatcggcaaggggcagcgcgcgctc
atcgtcagccctccgaaggccggtaagaccacggtcctccaggacatcgccaacgcgatc
gcgacgaacaatcccgagtgccacctcatggtcgtcctcgtggacgagcggcccgaggaa
gtcaccgacatgcagcgttcggtgaagggtgaggtcatcgcctccaccttcgaccgtccg
ccgagcgatcacaccctggtgtccgagctggccatcgagcgggcgaagcgcctggtcgaa
gcgggcaaggacgtcgtggtgctgctcgactccatcacccggctgggtcgcgcctacaac
aactcgtcgccggcgtcggggcgaatcctgtccggtggtgtcgactcgacggcgctctat
ccgccgaagcggttcctcggcgcggcccgcaacatcgagaacggtggctcgctcaccatc
atcgcctcggcgctggtggagaccggttccaccggtgacaccgtcatcttcgaggagttc
aagggcaccggtaacgccgaactcaagctcgaccgcaagattgccgaacggcgtgtcttc
ccggccgtcgacgtcaatctgtcgagcacccgcaaggacgagttgctcatgacgccggac
gagttcgccgtggtgcacaagctgcgccgggtgctctccgggctggattcgcaggcggcg
atcgacctgctcgtcaaccgtctcaagaagacgcagagcaacgtcgagttcctgatgcag
gtctcgaagaccgcgccgggcgctctcgacgactga
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