Rhodococcus triatomae: G4H71_05480
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Entry
G4H71_05480 CDS
T06846
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rtm
Rhodococcus triatomae
Pathway
rtm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
G4H71_05480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtm03400
]
G4H71_05480
Enzymes [BR:
rtm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
G4H71_05480
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
G4H71_05480
DNA repair and recombination proteins [BR:
rtm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
G4H71_05480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Cas12f1-like_TNB
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
QNG22558
LinkDB
All DBs
Position
complement(1169641..1170507)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAEFLREHAVGAVVGRIDVAAMSVLKTFDPPITAVSGRDVTGASRFGKFLA
LECSGLWLVTHLSRGGWLRWSDNPSPRPPKPGKGPLALRVHLYTPEGATPAFDLTEAGTK
KRLAVWVVDDPQSVPGIARLGPDALEITEPQLADLLSGSGARLKTVLVDQSVLAGIGNAY
SDEILHTARLSPFASARSLGEEQVHALFEVMRTVLVDAVARSVGQDAARLKGEKRSGMRV
HGRTGETCPVCGDTVREVSYAERSFQYCPTCQTGGRILADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgccggaggtggaggccctcgccgagttcctgcgcgagcatgcggtgggt
gccgtggtgggccggatcgacgtcgcggcgatgagtgtcctcaagacgttcgatccgccg
atcaccgcggtctcggggcgggatgtcaccggcgcgtcccggttcggcaagttcctcgct
ctcgaatgcagtgggctgtggctggtcacgcacctgtctcgcggagggtggttgcgctgg
tcggacaacccgtcgccgcggcccccgaagcccggcaaggggccgctggcgctgcgggtc
cacctctacacccccgagggcgcgaccccggcgttcgacctcaccgaggccgggacgaag
aagcgcctcgcggtctgggtcgtcgacgatccgcagtcggttcccggaatcgcgagactc
gggccggatgccctcgagatcaccgagccgcaactggcggacctgctgtccggcagcggc
gctcggctcaagacggtcctcgtggaccagtcggtgctcgcgggcatcggcaacgcctac
tccgacgagatcctgcacacggcacggttgtcgccgttcgcgtcggcacgctcgctcggg
gaggaacaggtgcacgcgttgttcgaggtgatgcggacggtgctcgtcgacgcggtcgcc
cgctcggtcggtcaggacgcggcccggctcaagggcgagaagcgttccgggatgcgggtg
cacggacgcaccggcgagacctgcccggtctgtggggacaccgtgcgcgaggtgtcctac
gccgaacgttcgttccagtactgccccacctgtcagaccgggggacggatactcgcggac
cggcggatgtcccggctgctcaagtag
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