Rhodococcus triatomae: G4H71_19575
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Entry
G4H71_19575 CDS
T06846
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rtm
Rhodococcus triatomae
Pathway
rtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4H71_19575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtm03019
]
G4H71_19575
Messenger RNA biogenesis [BR:
rtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G4H71_19575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QNG24953
LinkDB
All DBs
Position
4118095..4120137
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AA seq
680 aa
AA seq
DB search
MTRPPRRRAAKRQAGPPSPEAREQAVSSTPERAPEAPAAEASAPEAPAPSATAPSATETP
ARPPASTATQPARSGPVKSSSTKNGPTQGSSSRRRSGGRGGRGGAGDGKPAVVHPVARLG
SPPKAPRNGLRVVALGGIGEIGRNMTVFEHSGRLLIVDCGVLFPEDQQPGVDLILPDFRH
IEDRMDDVEAIVLTHGHEDHIGAVPFLLRLRPDVPVIGSKFTLALVAAKAREHRQRPKLV
EVTEGQRTTHGPFECEYFAVNHSIPDALAVAIRTEAGVVLHTGDIKLDQLPLDGRLTDLA
GFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKARQRVIVASFASHVHRIQ
QVVDVAHRYGRRVAFVGRSMVRNMQIAQDLGYLRVPDGLVVDIDTAATLPDDKLVLVSTG
SQGEPLSALSRMARGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGATVVTQQ
NAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAKATGVPEERIVLAEDG
VVVDMVDGLAEIVGQVPVGHVYVDGLSVGDVGDSTLSDRLVLGEGGFIAITIVVDETTGR
AVGIPEVSGRGFSDDPTALKEAAQLVEAELARLANEGVTETHRIAQSVRRIVGRWVADKY
RRRPMIVPTVMAVPSAAQGA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgactcgtcctccgcgtaggcgcgccgccaagcgtcaggccgggccgcccagccccgag
gcccgggaacaggccgtctcctcgaccccggaacgcgcacccgaggctcccgcagccgag
gcttccgcaccggaggccccagcaccgtctgccaccgcaccgtctgccaccgagaccccg
gcccgcccgcccgcgtccaccgcgacgcagccggcccggtccggtccggtgaagtcgtcg
tcgaccaagaacggaccgacgcagggttcgtcctcgcgccgtcggtccggcggtcgcggc
ggccggggtggggcaggggacggcaagcctgcggtggtgcatcccgtcgcccggctcggc
tccccgcccaaggcccctcgcaacggtctgcgcgtggtcgcactcggcgggatcggcgaa
atcggccggaacatgaccgttttcgagcacagcggcagattgttgatcgtggactgcggt
gtgctgttccccgaggaccagcagcccggcgtggatctgatcctgccggacttccggcac
atcgaggaccggatggacgacgtcgaggccatcgtgctcacccacggtcacgaggaccac
atcggcgcggtcccgttcctgctgcgcctgcggccggacgtcccggtgatcggttccaag
ttcacgctcgcgctggtcgcggcgaaggcccgcgaacaccgtcagcgccccaagctcgtc
gaggtcaccgaggggcagcgcaccacgcacggcccgttcgaatgcgagtacttcgccgtc
aaccactccattcccgatgcgctcgccgtcgcgatccgcaccgaggcgggcgtggtgctg
cacaccggcgacatcaagctcgaccagttgccgctggacggccggctcaccgacctggcc
gggttctcgcggctgggcgacgagggcgtggacctgttcctcgtcgactccaccaacgcc
gaggtccccggcttcgtcactcccgaacgcgagatcggcggagttctcgacacggtgatc
ggcaaggccaggcagcgggtcatcgtcgcctccttcgccagtcacgtgcaccggatccag
caggtcgtcgacgtcgcacaccgctacgggcgcagggtggccttcgtcggccgctccatg
gtccggaacatgcagatcgcccaggacctcggctacctgcgggtcccggacggattggtg
gtggacatcgacaccgccgcgaccctgcccgacgacaaactggtcctggtgtccaccggc
tcgcagggcgagccgctgtccgcgctctcacggatggcccgcggtgaacaccggcagatc
aacattcgggcggacgacctggtcgtcctcgcgtcctcgctgatcccgggcaacgagaac
tccgtgttcgccgtggtcaacggtctcgccaagcgtggagccaccgtcgtcacccagcag
aatgccaaggtgcacgtctccgggcacgcctctgcgggcgaactgctctacctgtacaac
gcggtgcgtcccaccaacgccatgcccgtacacggcgagtggcggcacctgcgggccaac
gccgcactggcgaaggccaccggcgtgcccgaggagcggatcgtcctcgcggaggacggt
gtcgtggtggacatggtggacggtctggccgagatcgtcggacaggttccggtcgggcac
gtctacgtcgacggcctgtccgtcggtgacgtgggcgattccaccctgtcggatcggttg
gtgctcggcgagggcggattcatcgcgatcacgatcgtggtggacgagaccaccggccga
gcggtcggcattcccgaggtctcgggccgtggattctccgacgacccgaccgccctcaag
gaggcggcgcagttggtcgaggcggagctcgcgcgcctggcgaacgagggtgtcaccgag
acccaccggatcgcccagtccgtccggcgcatcgtcggccgttgggtggccgacaagtac
cgcaggcgcccgatgatcgtcccgacggtcatggcggttccctccgcggctcagggcgcg
tag
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