Rathayibacter tritici: A6122_0557
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Entry
A6122_0557 CDS
T04388
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rtn
Rathayibacter tritici
Pathway
rtn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6122_0557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtn03021
]
A6122_0557
03400 DNA repair and recombination proteins [BR:
rtn03400
]
A6122_0557
Enzymes [BR:
rtn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6122_0557
Transcription machinery [BR:
rtn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6122_0557
DNA repair and recombination proteins [BR:
rtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6122_0557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SCNM1_acidic
ADIP
DUF1690
Motif
Other DBs
NCBI-ProteinID:
AND15714
UniProt:
A0A160KR29
LinkDB
All DBs
Position
622685..626584
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIIDVDDDGRHADMPGLENELRLEIKTLSDQRDSRIADRLARLETD
LAALEAEGAKSDQKRRTKDGAEKEMGQIRKSFDEDIARLESVWEQFRTLKVGDLKPEDAV
FNELVDRYGVYFEAYMGAEAIKKRLEQFDLQAEAETLHLQIAEGKGQKKIRAIKRLRVVN
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTIREGAAGEGR
AFSSVSEAILAKDQGSLHLNSKVKIRMSDVFFGQGQAPEGVELDDKGKVTAPVLLETTLG
RALFNEALPVDYPYFEQVADKTTISGIVNDLAERYPKVEVAASLDRIKDAGFYWATRSGV
TVALSDILTPPSKPEIIAGYEKKAAKVESEYDKGLTTQAERRQELVKIWTEATDEVATAM
RANFPTDNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIARPIISSYREGLSVAEY
FIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLELPIMLQDATGA
WIKDSNVENSVYARSLATPASNEAGERVAEAGEDVGDVLIEKLVGAGVRHIKVRSVLTCE
SAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQG
LPRVQELFEARTPKGASPIAEAAGRITIEDTDRARRVILQPDNGDEAVIYPVLKRSQLLV
EDGQSVTLGQQLHVGTVDPKEVLRVLGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVR
QMLRKVTVVDHGDTELLPGELVDRSRYSEVNRAALTEGKRTASARQEVMGITKASLATES
WLSAASFQETTRVLTQAAMEGKRDPLLGLKENVIIGKLIPAGTGLPKYRNVSVEATEEAK
AERYPNRIFADDAAFSDADLSFVDFDSFSSDGYEPGNYS
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaaccactttcgatgagctgcgcatcggcctcgcgacggccgatgacatc
cgtcgctggtcgcacggtgaagtgaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggtctgttcggcgagcagatcttcggaccttcccgcgactgggagtgc
tcctgcggcaagtacaagcgagtccgcttcaaaggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtcctcggttcgtcgcgagcggatgggccacatcgagctcgccgctccc
gtcactcacatctggtacttcaagggcgtcccctcgcgcctgggatacctgctggacatg
gcgccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcatcgacgtggac
gacgacggccgtcacgccgacatgcccggcctcgagaacgagctccggctcgagatcaag
accctctcggaccagcgcgactcccgcatcgcggaccgcctggcgcgcctggagaccgat
ctcgccgccctggaggcggagggcgcgaagagcgaccagaagcgccgcaccaaggacggc
gccgagaaagagatgggccagatccgcaagtccttcgacgaggacattgcgcggctcgag
agcgtgtgggagcagttccgcaccctcaaggtcggcgacctcaagcccgaggacgccgtc
ttcaacgagctcgtcgaccgctacggcgtctacttcgaggcctacatgggcgccgaggcg
atcaagaagcgcctcgagcagttcgacctccaggccgaggccgagacgctgcacctgcag
atcgccgagggcaagggtcagaagaagatccgcgccatcaagcgcctgcgcgtcgtcaac
tcgttcctcgccaccggcaactcgccggctgcgatggtcctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggaggccggttcgcgaccagcgacctg
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctccgccgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgaaaagcgcatgctgcaggaggcggtcgacgct
ctcttcgacaacggtcgtcgcggccgccccgtcaccggtaccggtaaccgcgccctcaag
tccctgagcgacatgctcaagggaaagcagggtcgattccgccagaacctgctgggcaag
cgcgtcgactactcgggccgctcggtcatcatcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatcaagcgcctg
atcgacctctcgcacgctcagaacatcaaggccgccaagcgcatggtggagcgatcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtcctgctgaaccgt
gcgcccacgctgcaccgactcggcatccaggccttcgagccccagctggtcgagggcaag
gcgattcagctgcacccgctcgtgtgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgccgctgtccgtcgaggcccaggccgaggcccgcatcctgatgctg
gcgtcgaacaacatcctcaagccctcggacggccgtccggtcaccctgcccacgcaggac
atgatcatcggcctccaccacctgacgaccatccgcgagggtgccgccggtgagggacgt
gcattctcctccgtgtccgaggcgatcctcgcgaaggaccagggctcgctgcacctgaac
tcgaaggtgaagatccgcatgtcggacgtcttcttcgggcagggtcaggcacccgagggc
gtggagctcgacgacaagggcaaggtcactgcgccggtgctgctcgagaccacactcggt
cgcgccctcttcaacgaggcgctgccggtcgactacccctacttcgagcaggtcgccgac
aagacgaccatctccgggatcgtgaacgacctcgcggagcgctacccgaaggtggaggtc
gccgcctccctcgaccggatcaaggacgccggcttctactgggccactcggtccggcgtg
accgtcgcactgtcggacatcctcacgcctccgtcgaagcccgagatcatcgcgggctac
gagaagaaggccgcgaaggtcgagtccgagtacgacaagggtctgaccacccaggccgag
cgccgccaggagctcgtgaagatctggaccgaggcgaccgacgaggtcgccacggccatg
cgcgcgaacttcccgacggacaacaccatcaaccgcatggtcacctccggtgcccgtgga
aactggctgcaggtgcgcaacatcgccggcatgcgaggcctggtgaacaacccgaagggc
gagatcatcgcccgtccgatcatctcctcctaccgcgagggcctgtcggtcgccgagtac
ttcatcgccacgcacggtgcccgcaagggtctggccgacaccgcgctgcgcaccgcggac
tcggggtacctgacgcgtcgactcgtcgacgtctcgcaggacgtcatcatccgtgaggac
gactgcggcaccacgaagggtctcgagctgccgatcatgctccaggacgccaccggcgcc
tggatcaaggactcgaacgtcgagaactcggtctacgcccgttcgctcgccaccccggcg
tcgaacgaggcgggcgagcgcgtcgccgaggccggcgaggacgtgggcgatgttctgatc
gagaagctggtcggagcaggtgtccgccacatcaaggtgcgctccgtcctgacctgtgag
tccgccgtcggcgtctgcgcggcctgctacggccgttcgctcgccaccggcaagctcgtc
gacatcggcgaggccgtcggtatcatcgcggcccagtcgatcggcgagcccggcacccag
ctcaccatgcgcaccttccacaccggtggctcggcctcggccgacgacatcacgcagggt
cttccccgcgtgcaggaactcttcgaggcccgtacccccaagggtgcgtcacccatcgcg
gaggccgccggtcgcatcacgatcgaggacaccgaccgggcccgccgcgtcatcctccag
ccggacaacggcgacgaggcggtcatctatccggtgctcaagcgctcgcagctgctcgtc
gaggacggccagtcggtcaccctcgggcagcagttgcacgtcggaacggtcgaccccaag
gaggtcctgcgcgtgctgggcgtccgcgaggtccagaagcacctggtgggcggcgttcag
ggcgtctaccgttcgcagggtgtgccgatccacgacaagcacatcgaggtcatcgtgcgc
cagatgctccggaaggtcaccgtggtcgaccacggcgacacggagctgctgccgggcgag
ctcgtcgaccgctcgcggtacagcgaggtcaaccgtgcggctctgaccgagggcaagcgg
accgcgtccgcacgccaggaggttatgggtatcaccaaggcctcgctcgcgaccgagtcc
tggttgtcggccgcgtccttccaggagaccacccgtgttctgacgcaggcggcgatggag
ggcaagcgcgacccgctgctgggcctgaaggagaacgtgatcatcggaaagctgatcccg
gcgggaaccggtctgcccaagtaccggaacgtgtcggtcgaagcgaccgaggaggcgaag
gcggagcggtaccccaaccgcatcttcgccgacgacgccgccttcagcgacgccgacctc
tcgttcgtcgacttcgactcgttctcgagcgacggctacgagccgggcaactacagctga
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