Rathayibacter tritici: A6122_0787
Help
Entry
A6122_0787 CDS
T04388
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rtn
Rathayibacter tritici
Brite
KEGG Orthology (KO) [BR:
rtn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtn03019
]
A6122_0787
Enzymes [BR:
rtn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A6122_0787
Messenger RNA biogenesis [BR:
rtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A6122_0787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
ResIII
T2SSE
nSTAND3
UvrD-helicase
SLFN-g3_helicase
AAA_30
NACHT
FtsK_SpoIIIE
AbfS_sensor
Zeta_toxin
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AND15940
UniProt:
A0A160KQT5
LinkDB
All DBs
Position
complement(905986..909900)
Genome browser
AA seq
1304 aa
AA seq
DB search
MSDVLSIRYPPELPVSARREDIAAAIRDHQVVIVAGATGSGKTTQLPKICLELGRESIAH
TQPRRIAARTIAERIAEELDDEVGGLVGYQVRFTDKASASTRIKLMTDGILLNEMNHDRM
LSRYDTIIIDEAHERSLNIDFLLGYLHRLLPQRPDLKVIITSATIDPQSFAAHFADAAGE
PAPIIEVSGRTYPVEVRYRPLVAEEPEEDDDTDVPDATSGSRDLMTGITDALAELAREDP
GDVLVFLSGENEIRDAEDAIRGRNLPGTEVLPLYGRLSAADQHRVFEKGRTPGVRRRVVL
ATNVAETSLTVPGIRYVIDGGTARISRYSARSKVQRLPIEAVSQASANQRSGRSGRTSAG
IAIRLYSEEDYLRRPEYTDPEILRTGLAAVILQMISLGLGDIASFPFLTPPDSRGIKDGL
DLLTELGALRTPTSPSLPRDATSVRDTPQKAYPSGISRKGDEAAAPQLTRIGRDLARLPI
DPRFGRMVIESRRHGVSREVMAIVAGLTIQDVRERPLERRAQADQQHARFVDPTSDFLTL
LNLWNYLEEKQDELSSSAFRRLCKAEYLNYLRVREWQDVFRQLRQLARPLKLELGEPKVD
PDGIHRSLLAGLLSHLGIKDTTSQQAQRAAKNRERQNVQYLGARNAKFSIFPGSALAKKL
PDAVMSAELVETSRLFARSNAAIDPAWVEAIAGDLVKRQFSEPHWEKSQGAAVAYEKVTL
YGVPIIARRRVQFSRIDASYARELFIRHALVDGEWESRHAFDKKNRALRAELERLEERTR
RRDLLVDDEAVFDFYDRRLPRDITSVRSFDSWWRTTQHDEPDLLTMTQETLLPEDAEQVD
ETAFPTQWRQADQRLRLSYRFEPGTEEDGVTVHVPLALLPRVTPLGFDWLVPGLRAELVT
AMIKALPKHLRRNVVPANDWARKLTAALPHDVPNPPTESFAATLAGAIRREAGVVVQPED
FDLERIPSHLRVTFAVADERGRTIAAGKELAPLAERLRGRVRDEVARVVEARVPDALERR
GLKTWDMPELPRVTDTRQGGNTIRAYPALIDDGDSVSIRLLATAEDQAREHPRGVRRLLL
LGTPSPVAYVQQHLTSNEKLVLAQSPYQNTTALFSDCLLACVDAVLWRMKPDGMLFLRAE
FDAVRDRVSASVMDAMFETVKTVTTILTTARGVEKALKASTSMALLPALTDAREQLSGLV
YPGFVSATGVERLRHLPRYLAAITERFGKIAENVGRDRIWLNEVQAAQELYRSAGGGVPL
PAHAPERIERARWLLEELRVSFFAQSLGTAESASLQRIRKVLTP
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgtgctcagcatccgctacccgcccgaactgcccgtgtcggcgcggcgcgag
gacattgccgcggcaatccgcgaccaccaggtggtcatcgtcgccggagccaccggatcc
ggcaagacgacccagctgcccaagatctgcctcgagctcgggcgcgagagcatcgcgcac
acccagccgcgccgcatcgcggcccgcaccatcgccgagcgtatcgcggaggaactcgac
gacgaggtcggcgggctggtcggctatcaggtccggttcaccgataaggcgtccgcgtcg
acccggatcaagctgatgacggacggcatcctgctcaatgagatgaaccacgaccggatg
ctcagccggtacgacacgatcatcatcgatgaggcgcacgagcgcagcctgaacatcgac
ttcctcctgggctacctgcaccgcctgctgccgcaacgacccgacctcaaggtgatcatc
acctccgcgacgatcgacccgcagagcttcgcggctcacttcgccgacgccgcgggcgag
ccggctccgatcatcgaggtgtccggccgcacctacccggtcgaggtccgctaccggccg
ctggtcgccgaggagccggaggaggacgacgacaccgacgtcccggacgcgacgagcggc
agccgcgacctgatgaccggcatcactgacgccctggccgaactggcccgcgaggatccg
ggcgacgtgctggtgttcctctcgggcgagaacgagatccgcgacgccgaggacgcgatc
cgcgggcggaacctgcccggcacggaggtgctccccctctacggccggctctccgccgcc
gatcagcaccgcgtcttcgagaaggggcgcacccctggcgtccggcgccgcgtcgtcctc
gcgaccaacgtggcggagacaagcctcacggtccccgggatccgctacgtgatcgacggc
ggcacggcccgtatctcccgttacagcgcgcgatcgaaggtgcagcggctaccgatcgag
gccgtctcgcaggcgtcggcgaatcagcgctcgggccgctcgggtcgcaccagcgcgggc
atcgcgatccgcctctactccgaggaggactacctccgccgccccgagtacaccgacccc
gagatcctgcgcacgggcctggccgccgtcatcctgcagatgatctcgctcggcctcggc
gacatcgcctcgttccccttcctcacgcctcccgactcccgcggtatcaaggacggcctc
gacctgctcacggaactcggcgccctccgcacccccacctccccctcccttccgcgagat
gccacttcggtacgcgacacgccgcagaaggcgtacccaagtggcatctcgcggaagggg
gacgaggcggcggcgccgcagctcacgcggatcgggcgggatctcgcgcggctcccgatc
gatccgcgcttcgggcggatggtcatcgagtcgcgccggcacggcgtcagccgcgaggtg
atggcgatcgtcgcgggtctcacgatccaggacgtccgcgagcgcccgctcgagcgccga
gcgcaggccgaccagcagcacgcgcgcttcgtcgatccgaccagcgacttcctcaccctc
ctgaacctctggaactaccttgaggagaagcaggacgagctctcctccagcgccttccgc
cgcctgtgcaaggccgagtacctcaactacctgcgcgtgcgcgagtggcaggacgtgttc
cgtcagctgcgccagctcgcgcgtccgctcaagctcgagctcggtgagccgaaggtcgac
cccgacgggatccaccggagcctgttggccggcctgctctcgcacctgggcatcaaggac
accacgtcgcagcaggcgcagcgtgcggcgaagaaccgcgagcgccagaacgtgcagtac
ctcggcgcccgcaacgcgaagttctcgatcttccccgggagcgccctggccaagaagctg
cccgacgcggtgatgagcgccgagctggtcgagacgagccgcctcttcgcgcgctcgaac
gcggcgatcgaccccgcctgggtcgaggcgatcgccggtgacctggtgaagcggcagttc
agcgagccgcactgggagaagtcgcagggcgctgccgtcgcctacgagaaggtcacgctc
tacggagtgccgatcatcgcgcgccgccgcgtccagttctcgcggatcgacgcctcctac
gcccgagagctcttcatccggcacgccctcgtcgatggcgaatgggagtcacggcacgcg
ttcgacaagaagaaccgggccctgcgcgccgaactcgagcgcctcgaggagcgcacccgc
cgccgcgacctgctcgtcgacgacgaggcggtcttcgacttctacgaccgccgcctcccg
cgcgacatcacctccgtgcgctccttcgactcctggtggcgcactactcagcacgacgag
cccgacctgctgacgatgacgcaggagactctgctgcccgaggacgcggagcaggtcgat
gagaccgcgttcccgacgcagtggcgccaggcagaccagcgcctacggctctcgtaccgg
ttcgagccggggacggaggaggacggagtgacggtgcacgtgccgctcgcgctgctgccg
cgcgtcactccgctcggcttcgactggctggtgccggggctccgcgccgagctggtgacc
gcgatgatcaaggcgctgcccaagcacctgcgccggaatgttgtgcccgcgaacgactgg
gcgcggaagctcaccgccgccctcccgcacgacgtgccgaatccgccgacggagtcgttc
gccgcgaccctcgccggagcgatccgccgcgaggccggagtggtagtgcagcccgaggac
ttcgacctcgagcggatcccctcgcacctgcgcgtcaccttcgcggtcgccgacgagcgg
gggcgcacgatcgccgccggcaaggagctcgccccgctggccgaacggctgcgcggccgg
gtgcgcgacgaggtcgcgcgcgtcgtcgaggcccgcgtgcccgacgcgctcgagcgccgg
ggactgaagacgtgggacatgccggagctgccccgcgtcaccgacacccggcagggcgga
aacacgatccgcgcctacccggccctgatcgacgacggcgactcggtgtccatccgcctg
ctcgccaccgccgaggaccaggcgcgcgagcaccctcggggcgtccgccgcctcctcctg
ctcgggacgccgagccccgtcgcctacgtgcagcagcacctcacctcgaacgagaagctc
gtgctcgcgcagagcccgtaccagaacaccacagcgctcttcagcgactgcttgctcgcc
tgcgtcgacgcggtgctctggcggatgaagcccgacggcatgctcttcctgcgcgccgag
ttcgatgccgtgcgcgaccgcgtctcggcgagcgtgatggatgcgatgttcgagaccgtg
aagaccgtcactacgatcctgaccaccgcccgcggcgtcgagaaggcgctcaaggcctcg
acgagcatggcgctcctgcctgcgctcaccgacgcgcgcgagcagctctcgggcctggtc
taccccggcttcgtctcggcgaccggagtggagcggctgcggcacctcccgcgctacctc
gcggcgatcaccgagcgcttcggcaagatcgccgagaacgtgggccgcgaccgcatctgg
ctgaacgaggtgcaggccgcgcaggagctctaccgctccgccggcggcggcgtaccgctg
cccgcgcacgcccctgagcggatcgagcgcgcccgctggctcctggaggagctgcgggtg
agtttcttcgcgcagtcgctcggcaccgccgagagcgcctctctccaacgcatccgcaaa
gtcctgaccccctga
DBGET
integrated database retrieval system
