Rathayibacter tritici: A6122_0814
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Entry
A6122_0814 CDS
T04388
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rtn
Rathayibacter tritici
Pathway
rtn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A6122_0814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtn03400
]
A6122_0814
Enzymes [BR:
rtn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6122_0814
DNA repair and recombination proteins [BR:
rtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A6122_0814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AND15967
UniProt:
A0A160KRJ8
LinkDB
All DBs
Position
941760..945371
Genome browser
AA seq
1203 aa
AA seq
DB search
MALNEIISALSRASTFDDALAYAVRDADFSVPDGLRVPLLAGLIQRRAEAGRPQAALVVT
ATGRDSENVRASLGCVLPDADVVEFPAWETLPHERLSPSAEIVGRRLDALRRMKQWSGER
PLVVVASVRAALQPVADNLADIEPIRLVKGTRGYDLGRISAELVDLAYARVDMVTRRGEF
AVRGGILDVFPAVAEHPSRVDFFGDEVDSIRAFSVADQRSLPGEIDSVLLPPSRELLLVP
AVRQRAREMLHEFPSLSAMLAKIAEGIPVEGMESLAPALLERLVPISHYLPDGAAVAVLA
PERVATRAISLAETNREFLQAAWSAATAGAEAPIDLASGEFISLGALRDSVALSTPGADA
PDHPWWTMSTFRQGPAAGEAEVLPEELGIDEILAVRVEGEPVPGFGASVEGALAHVRARL
ADGWTVVLTAPGTGTVERTDQVLAEHEVAARIVADLPAGLETGLAYVVQASVDHGFEVAE
AKLALLTDTEFYGRSVGYDSRAVKKLASRRKNVVDPLQLSPGDHVVHATHGIGRFVELSQ
REVSSGGRNAVKTRREYLVLEYAPSKRGFPGDKLLVPTDQLDLLSRYVGGEAPALSKMGG
SDWAQAKSKARRAVRDIAVELVKLYSARMASRGHAFPPDTPWQRELEEAFPFAETPDQLT
VIDEVKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQHLE
TFQERFAGFPVHLRALSRFQSAKESKETIDGLADGTVDMVIATHRLLSDSIAFKDLGLLV
IDEEQRFGVEHKDKLKALKKNVDILSMSATPIPRTLEMAVTGIREMSTLATPPEERHPIL
TFVGPYSEKQISAAIRRELLREGQVFFVHNRVSTINRAASQIAELVPEARIAVAHGKLSE
AQLERIIVDFWERKFDVLVSTTIVETGLDIPNANTLIVDRADKYGLSQLHQLRGRVGRGR
ERAYAYLLYDEMKPLSETAHDRLQTLAANSDLGGGMQIALKDLEIRGAGNLLGGEQSGHI
QGVGFDLYLRMIGEAVDTFRGEVAEGQTELRLELPVDARIPEEYVDSERLRLEAYQKLSA
ASSLTAKEGSIDLVVEELTDRYGELPEAVENLILVSRLRMRAQRAGLSDVVAMGSNVRVA
PAHLPDSIQVRLRRMYPSAKYLQQADAVVVPMPVLDGVPLGDRALIQWVASLLDALFPEP
VSV
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtggccctcaacgagatcatctcggcgctgtcgcgcgcctccacgttcgacgatgctctg
gcgtacgcggtgcgggacgctgatttctcggtgccggacggccttcgggtccctctgctc
gcggggttgatccagcggcgggcggaggcggggcgtccgcaggctgcgctggtggtcacg
gccacggggcgcgactccgagaacgtgcgcgcctcgctcggctgcgtgctgccggacgcg
gacgtcgtcgagttccccgcgtgggagacgctgccgcacgaacgtctgagcccgagtgcc
gagatcgtcgggcggcggctcgacgcgctgcggcggatgaagcagtggtcgggggagcgg
ccgctcgtggtcgtcgcctcggtgcgtgcggcgctgcagccggtcgcggacaacctcgcc
gacatcgagcccatccggctcgtgaagggtacgcgcggctacgacctgggccgcatctcg
gccgagctggtcgatctggcttacgcgcgcgtcgacatggtcacccgccgcggcgagttc
gcggtgcgcggcggcatcctcgacgtcttcccggcggtggccgagcacccgagccgggtg
gactttttcggcgacgaggtcgactccatccgcgccttctccgtggccgatcagcgctcg
ctcccgggcgagatcgactccgttcttttgccgccgagccgcgagctgctgctcgtgccg
gcggtgcggcagcgggcccgcgagatgctgcacgagttccccagcctgtccgcgatgctc
gcgaagatcgccgagggcatcccggtcgagggcatggagtcgttggcccccgcgctgctg
gagcgactggtcccgatctcgcactacctccccgacggcgcggccgtcgccgttctcgcc
cccgagcgcgtcgcgacgcgggcgatcagcctcgccgagacgaaccgcgagttcctgcag
gcggcgtggagtgcggcgaccgccggcgccgaggctccgatcgacctcgcctccggcgaa
ttcatctcgctcggcgcgctgcgcgactccgtcgcactgagcactccgggcgccgatgct
cccgatcacccgtggtggacgatgagcacgttccgccagggccccgccgcgggtgaggcc
gaggtgctgccggaggaactcggcattgacgagatcctcgccgtccgcgtcgagggcgag
ccggtccccggtttcggtgcgagtgtcgagggtgccctcgcgcatgtccgcgcgcgcctc
gccgacggctggaccgtcgtcctgaccgcccccggcaccggcacggtcgagcgcaccgac
caggtcctcgccgagcacgaggtcgccgcccgcatcgtcgccgacctgcccgccgggctc
gagaccggcctcgcctacgtggtgcaggcctccgtcgatcacggcttcgaggtggcggag
gcgaagctcgccctgctcaccgacaccgagttctacggtcgctccgtcggctacgactcc
cgcgcggtcaagaagctcgcgtcgcgccgcaagaacgttgtcgatccgcttcagctcagc
cccggcgaccatgtggtgcacgccacacacggcatcggccgcttcgtcgagctctcgcag
cgcgaggtctccagcggaggccgcaacgcggtgaagactcgccgcgagtacctggtgctc
gagtacgcgcccagcaagcgcggcttcccgggcgacaagctgctcgtccccactgaccag
ctcgacctgctctcccgttacgtcggcggcgaggctccggcgctgagcaagatgggcggg
agcgactgggcgcaggccaagagcaaggcacggcgagcggtccgcgacatcgcggtcgag
ctggtgaagctctactccgcccggatggcctcccgcgggcacgccttcccgccggacacc
ccgtggcagcgcgagctggaggaggcgttcccgttcgccgagacccccgatcaactcacg
gtgatcgacgaggtcaaggccgacatggagcggccgatcccgatggaccgtctgctttcg
ggcgacgtcggcttcggcaagaccgaggtcgctgtacgcgccgcgttcaaggccatccag
gacggcaagcaggtcgcgatgctcgtgccgaccacgctgctcgtgcgccagcacctcgag
acgttccaggagcgcttcgccggcttccccgtgcacctgcgggcgctcagccggttccag
agcgcgaaggagtcgaaggagacgatcgatggcctcgcggacggcaccgtcgacatggtc
atcgcgacccaccggctcctcagcgacagcatcgccttcaaggacttgggcctgctcgtg
atcgacgaggaacagcgcttcggcgtggagcacaaggacaagctgaaggcgctgaagaag
aacgtcgacatcctctcgatgagcgccacgcccatcccgcgcacgcttgagatggcggtg
accggtattcgcgaaatgtccactctcgctactccgccggaggagcgccatcccattctg
actttcgtcggcccctactccgagaagcagatctcggccgccatccgccgtgaactgctg
cgcgagggccaggtgttcttcgtgcacaaccgggtctcgacgatcaaccgtgctgcctcc
cagatcgccgaactggtgccggaggcgcgcatcgccgtcgcccacggcaagctcagcgaa
gcccagctcgagcggatcatcgtcgacttctgggagcgcaagttcgacgtgctcgtctcg
acgaccattgtcgagaccggcctcgacatcccgaacgcgaacacgctgatcgtcgaccgc
gccgacaaatacggactctctcagctgcaccagttgcgcggacgggtgggccgtggccgc
gagcgcgcctacgcctacctcctctacgacgagatgaagccgctgagcgagacggcgcac
gaccgactgcagacgctcgctgccaactccgacctcggcggcggcatgcagatcgcgctg
aaggatctcgagatccgcggcgcgggcaacctgctcggcggggagcagtccgggcacatc
cagggtgtggggttcgacctgtacctgcggatgatcggcgaggccgtcgacaccttccgt
ggcgaggtcgccgagggtcagacggagctgcggctcgaacttcccgtcgacgcgcggatc
ccggaggagtacgtcgacagcgagcggctgcggctggaggcataccagaagctctcggcc
gcctcctcgctgaccgcgaaggagggcagcatcgacctggtcgtcgaggagctgaccgac
cgctacggcgagctgccggaggcagtggagaacctcatcctggtatcccggctccggatg
cgcgcgcagagggcggggctcagcgacgtggtcgcgatgggctcgaacgtgcgcgtcgct
cccgcgcacctgcccgactcgatccaggtgcgcctgcgccggatgtacccgagtgcgaag
tacctgcagcaggccgatgccgtcgtggtgccgatgcccgtgctcgacggcgtcccgctg
ggcgaccgggcgctgatccagtgggtggcgtcgctcctggacgcgctgttcccggagccg
gtctccgtctga
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integrated database retrieval system
