Rathayibacter tritici: A6122_0993
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Entry
A6122_0993 CDS
T04388
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rtn
Rathayibacter tritici
Pathway
rtn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6122_0993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtn03019
]
A6122_0993
Messenger RNA biogenesis [BR:
rtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6122_0993
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AND16143
UniProt:
A0A160KRQ9
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All DBs
Position
1141133..1142809
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AA seq
558 aa
AA seq
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MPSPVITPAPLAPGTLRIIPLGGLGEIGRNMTVFEINGKLLVVDCGVLFPEENQPGVDLI
LPDFTPIKDRLDDIVAVVLTHGHEDHIGAVPYLLRLKRDIPLIGSTLTLALVEAKLKEHR
IKPYTLTVKEGDVENLGPFELEFIAVNHSIPDALAVAILTDAGSVLHTGDFKMDQLPLDG
RITDLRAFARLGEEGIDLFLVDSTNADVPGFTPNERDIGPVIESVMAKATRRVIVASFSS
HVHRVQQVLDAAHANGRRVALLGRSMVRNMGIAADLGYLRVPPGVLVDMKKAGDVPENRI
VYMSTGSQGEPMAVLSRMANLDHQIEPGEGDTVILASSLIPGNENAVYRVINGLTRLGAT
VVHKGNAKVHVSGHAAAGELIYCYNILAPLNVMPVHGEYRHLVANAKLARETGIAEENTI
IAEDGTVIDLLDGKATVVGQLDLGFVYVDGSSVGEITDADLKDRRILGEEGFISIIVVVE
AGTGRVVVGPEIHAKGFAEDDSVFDEVKPRIAAALEEAVQNGASDQHALSQAVRRVVGRW
VNTSYRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtcccgtgatcactcccgcgcccctcgcgccgggcaccctgcggatcatcccc
ctcggcggcctcggcgaaatcggtcgcaatatgaccgtgttcgagatcaacggcaagctc
ctggtggtcgattgcggcgtgctcttcccggaggagaaccagccgggcgtcgacctgatc
ctgccggacttcacgccgatcaaggatcggctcgacgacatcgtcgcagtggtgctcacc
cacggccacgaggaccacatcggcgccgtcccgtacctgctccggctcaagcgagacatc
ccgctgatcggctccacgctcacgctcgccctggtcgaggccaagctcaaggagcaccgg
atcaagccctacacgttgacggtgaaggagggcgatgtcgagaacctcggtcccttcgag
ctcgagttcatcgccgtgaaccactcgatcccggacgcgctggccgtcgcgatcctcacc
gacgccggctccgtgctgcacactggcgacttcaagatggaccagctcccgctggatggc
cgcatcaccgacctccgcgccttcgcccgcctcggcgaggagggcatcgacctgttcctg
gtcgactcgaccaatgccgacgtccccggattcacgccgaacgagcgcgacatcggcccg
gtcatcgagagcgtcatggcgaaggcgacccgccgcgtcatcgtcgcgagcttctccagc
catgtgcaccgggtgcagcaggtgctcgacgcagcgcacgcgaacggccgtcgggtggcg
ctgctcggccgctcgatggtgcgcaacatggggatcgcggccgacctcggctacctcagg
gtcccgccgggggtgctggtcgacatgaagaaggcgggcgacgtgccagagaaccggatc
gtctatatgtcgaccggatcgcagggcgagccgatggctgtgctcagccgcatggcgaac
ctcgatcaccagatcgagccgggcgagggcgacaccgtgatcctcgcctccagcctcatc
ccgggcaatgagaacgcggtttaccgcgtgatcaacgggctcaccaggctcggcgcgacg
gtcgtgcacaagggcaacgcgaaggtgcatgtctccgggcacgcggccgccggcgagctg
atctactgctacaacatcctcgcgccgctgaatgtcatgccggtgcacggcgagtaccgg
cacctggtcgcgaacgcgaagctcgcgcgcgagaccgggatcgcggaggagaacacgatc
atcgccgaggacggcacggtgatcgacctgctcgacgggaaggcgaccgtcgtcggtcaa
ctcgacctgggtttcgtctacgtcgacgggtcgtcggtcggcgagatcacggacgcggac
ctcaaggaccgtcggatcctcggcgaggagggcttcatctccatcattgtggtcgtcgag
gccgggacgggccgggtcgtggtcggccccgagatccatgcgaagggattcgcggaggac
gacagtgtcttcgacgaggtgaagccgcgcatcgcggcggcactcgaggaggcagtgcag
aacggagcgagcgatcagcacgcgctctcgcaggccgtccgtcgcgttgttggtcgatgg
gtcaacacgtcgtaccgtcgccgtccgatgatcgtgccgctggtcatcgaggcctga
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