Ruminococcus torques: RTO_16020
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Entry
RTO_16020 CDS
T02606
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rto
Ruminococcus torques
Pathway
rto03420
Nucleotide excision repair
rto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RTO_16020
03430 Mismatch repair
RTO_16020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rto03400
]
RTO_16020
Enzymes [BR:
rto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RTO_16020
DNA repair and recombination proteins [BR:
rto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RTO_16020
MMR (mismatch excision repair)
Other MMR factors
RTO_16020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
ResIII
SPATA6
Motif
Other DBs
NCBI-ProteinID:
CBL26194
UniProt:
D4M4N2
LinkDB
All DBs
Position
1666613..1668919
Genome browser
AA seq
768 aa
AA seq
DB search
MSIYDKLNEPQREAVYHTDGPLLILAGAGSGKTRVLTHRIAYLIGERGVNPWNILAITFT
NKAAEEMRQRVDNLVGFGAESVWVSTFHSACVRILRRFIDRLGYENHFTIYDTDDQKTLI
KEVCRKVDVDTKVFKERSLLSAISSAKNEMILPDEFELNAGGDFAKMKIAKVYREYEAQM
RANNALDFDDLLVKTVQLLQTQPDVLESYQERFRYIMVDEYQDTNTVQFQLVSLLAGKYK
NLCVVGDDDQSIYKFRGANIRNILDFEHEFPDAKVIKLEQNYRSTGNILNAANSVIANNR
GRKEKSLWTENGEGELIRLRQFDTAFDEADFIGEDIKSAVRQGGSYNDSAVLYRTNAQSR
LLEEKFIAMNIPYKIVGGVNFYARREIKDLLAYLKTIDNGRDDVAVRRIINVPKRGIGLT
TINRIQESATERGIGFYEALLAPGLIAGVGRSATKLDSFAALIEYFKTLAEEMNITDLLQ
EVIEKTGYIESLENEDKEEAKTRKENIDELISKAATYEESCQDKDEKATLSGFLEEVALV
ADIDSLDEDQEYVVLMTLHSAKGLEFPRVYLAGMEDGLFPGYMSINAGDREELEEERRLC
YVGITRAEQELTLTSARRRMVHGETQYNPMSRFVKEIPRELLDTGNKKFTQETEMPAQQN
TYARAREAFRAQAFAGALGGMTPAKNQGAGKSLTGSQALASLQKGSQLAAGGNGPLGYEV
GDRVRHVKFGEGTVTDIKEGGRDHEVTIEFDSVGTRKMFAKFAKLVKV
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttatgataaattaaatgaaccacagagagaagccgtttaccacacggacggc
cctcttctgatccttgccggagctggttcaggaaaaacaagagttctgacgcacaggatt
gcatatctgatcggagaacgtggcgtgaacccatggaatattcttgcaatcacatttacg
aacaaagcggcagaagagatgcgccagcgtgtggataatcttgtcggttttggagcagaa
agtgtatgggtgagcacatttcattctgcatgtgtgcgtattttgagaagatttattgac
agattagggtatgagaatcattttaccatatatgatacagatgatcagaagacattaatt
aaggaagtctgtcggaaagtagatgtggatacgaaagtgtttaaagaaagaagtctgctt
tcagcaatttcatctgccaagaatgagatgatccttccggatgaatttgaactgaatgcc
ggaggagactttgcaaagatgaagattgctaaggtttaccgcgagtatgaggcgcagatg
agagcgaataatgcactggattttgatgatctgcttgtaaagacagtgcagcttttgcag
acacagccggatgtgcttgagagttatcaggaaagattccgctatattatggtagatgaa
tatcaggatacaaatacagtccagtttcagctggtaagccttcttgcaggaaaatataag
aatctttgtgtcgttggagatgatgaccagtcaatctacaagttccgtggagcgaatatc
cggaatattcttgactttgagcatgaatttccggatgcaaaggtgatcaaactggagcag
aactacagatctacagggaatattctgaatgcagcaaacagtgtgatcgcgaataaccgc
ggaagaaaggagaaatcactttggacggagaacggagaaggtgaactgattcgtctgcgt
cagtttgatactgcatttgatgaggcggatttcataggcgaagatatcaaaagtgctgtc
agacagggaggttcctacaatgacagtgcagttctttatcgtacgaatgcacaatcccgt
ctgctggaagagaaatttattgccatgaatattccttataagattgtcggcggtgtaaat
ttctatgcgagaagagagattaaggatcttcttgcttatctcaagacaatcgacaatgga
cgtgatgatgttgcggttagaagaatcattaatgtcccaaagagaggaatcggtcttaca
acaattaaccggattcaggagtctgcaacagaacgtggaattggtttttatgaggcatta
ctggcaccggggctgatcgcaggagtgggaagaagtgcaacaaaactagactcttttgcg
gcattgatcgagtattttaagacgttggcagaagagatgaacatcacagatcttttacag
gaagtgattgagaagacaggatatatagaaagccttgaaaatgaagataaagaagaggcg
aaaacaagaaaagagaatatagacgagctgatcagtaaagcggcaacttatgaggaaagt
tgtcaggataaagatgaaaaggcaacattgagcggattccttgaagaagttgctttggtt
gcggatattgacagtctggatgaagaccaggaatatgttgttctgatgactttacatagt
gcaaagggacttgaatttccacgtgtttatcttgcagggatggaagatgggcttttcccg
ggatatatgagtattaatgcaggagacagagaagaactggaagaagagcggagactttgt
tatgttggaatcacaagggcagagcaggaactgactttgacaagtgcgcgcagaagaatg
gtacacggtgagacacagtacaatccgatgtcaagatttgtgaaagagatcccgagggaa
ctgcttgatacaggaaacaagaagtttacccaggagacggagatgccagcacagcagaat
acatatgcacgtgccagagaagcatttcgggcacaggcattcgcaggagcacttggcgga
atgacacctgcaaagaatcagggggcgggtaagtcgcttacaggaagtcaggcactggca
tccctgcagaagggaagtcagctggcagcaggtgggaatggtccacttggttatgaggtc
ggagaccgggtacgtcatgtgaagtttggggaaggaacagtaacggatatcaaagaaggt
ggacgagatcacgaggttacgattgaatttgacagtgtcggaacacgcaagatgtttgca
aaatttgccaagcttgtaaaggtatga
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