Ruminococcus torques: RTO_17850
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Entry
RTO_17850 CDS
T02606
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rto
Ruminococcus torques
Pathway
rto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RTO_17850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rto03021
]
RTO_17850
03019 Messenger RNA biogenesis [BR:
rto03019
]
RTO_17850
Transcription machinery [BR:
rto03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RTO_17850
Messenger RNA biogenesis [BR:
rto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RTO_17850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
AAA_22
NACHT
S1CSD-TOTE-2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CBL26351
UniProt:
D4M539
LinkDB
All DBs
Position
1868800..1870140
Genome browser
AA seq
446 aa
AA seq
DB search
MTREKYESLPLATLKELAKARKMRGVSTLKKGDLIDAMLELDEQEEQKEAAEEAREEVKE
EKKEETDIEQLDSGFTANGILEVLQDGYGFIRSDNYLPGDGDVYVAPSQIRRFGLKTGDI
LTGNTRVKTQGEKFSALLYVSTINGLRPAEAMKRKNFEDLTPIFPNQRIRLENPGCTTAM
RIVDLVSPIGKGQRGMIVSPPKAGKTTLLKEVALSVQKTEPNMHLLILLIDERPEEVTDI
REAIEGPNVEVIHSTFDELPEHHKRVSEMVISRAKRLVEHGKDVMILLDSITRLSRAYNL
IVPPSGRTLSGGLDPAALYSPKRFFGAARNMREGGSLTILATALVDTGSKMDDVVYEEFK
GTGNMELMLDRKLQEKRVFPAIDIPKSGTRREDLLLTKEEQDAVYIMRKAMNGMKSEEAV
DNLLNMFSRTKTNEELVQQIIRQKFI
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacacgagaaaaatatgaatcattgccgctggcaacattgaaagaacttgcaaaagca
agaaagatgagaggtgtttctacattaaagaaaggcgatctgatcgatgcaatgcttgag
ctggatgagcaggaagagcagaaagaggcagcagaagaagcgagagaagaagtaaaagaa
gagaaaaaagaagagacagatattgaacagttggacagtggttttacagcaaacggaatc
cttgaggtacttcaggatggatatggattcattcgttctgacaattatcttccgggagat
ggagatgtctatgttgcgccttcccagattcgcagattcggacttaaaacaggcgatatc
ctgacaggaaatacaagagttaagacgcagggagaaaagttcagtgcacttctttatgtg
tctacgatcaatggactgcgcccggcagaggcaatgaagagaaagaactttgaagacctg
actccgattttcccgaatcagagaatccgtctggagaatccgggctgtacaacagcaatg
cgtattgttgatcttgtttcccctattggaaagggacagagaggtatgattgtatctcca
ccgaaagcaggaaaaactacattattaaaagaagttgcattatctgtacagaagacagaa
ccgaatatgcatcttctgattctgttgatcgatgaacgtccggaagaggtgactgatatt
cgtgaggcaattgaaggtccgaatgtagaggtgattcattctacatttgatgaacttccg
gagcatcacaaacgagtatcagaaatggttatctcaagagcaaaacgtctggtagagcat
ggaaaagacgttatgattcttcttgacagcatcacaagactttcaagagcatataacctg
atcgttccaccatcaggaagaacactttccggtggtcttgatccggcagcactttacagt
ccaaagcgtttcttcggagcagcaagaaatatgagagaaggtggaagccttacgattctt
gcaacagcactggttgatacaggaagcaagatggatgatgttgtttatgaagaatttaag
gggacaggtaacatggaactgatgcttgacagaaagcttcaggagaaaagagtgttcccg
gcaattgatattccaaaatcaggaacaagaagagaagatcttcttcttacaaaggaagaa
caggatgcagtttatattatgagaaaagcaatgaacggcatgaaatcagaagaggcagtg
gacaatcttttgaatatgttttcccgtacaaaaacaaacgaagagcttgttcagcagatc
atccgtcagaaatttatctaa
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