Ruminococcus torques: RTO_19580
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Entry
RTO_19580 CDS
T02606
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rto
Ruminococcus torques
Pathway
rto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RTO_19580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rto03019
]
RTO_19580
03016 Transfer RNA biogenesis [BR:
rto03016
]
RTO_19580
Enzymes [BR:
rto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RTO_19580
Messenger RNA biogenesis [BR:
rto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RTO_19580
Transfer RNA biogenesis [BR:
rto03016
]
Prokaryotic type
tRNA degradation factors
RTO_19580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
KH_N4BP1_2nd
Chordopox_A20R
KH_5
DUF4891
Motif
Other DBs
NCBI-ProteinID:
CBL26500
UniProt:
D4M5I8
LinkDB
All DBs
Position
2030900..2032987
Genome browser
AA seq
695 aa
AA seq
DB search
MYKKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPREGIDFFPLSVE
YNERMYAVGKIPGGFNKREGKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQ
DCSPELTAMLGAALATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVAST
KEKVIMIEAGAKEVPEAKMIEAIFAAHDLNQKVIAFFDTIVAECGKPKHEYQSFAVPQEL
FDAIQEIVPAAEMEEAVFTDDKQTREENIRVITERLEEAFADNEEYLAKLGEAVYQYQKK
TVRKMILKDHKRPDGRAIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICTMTTLAPLSEAQ
KLDGLDEAEKTKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSESEFP
YAIRTVSETFESNGSTSQASVCASSMSLMAAGVPIKSAVAGISAGLVTGETDDDYLVLTD
IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMDEVMSK
AIAEPRKEVGEFAPKIIQMQIDPQKIGDVVGQRGKTINAIIDETGVKIDIDDEGNVSICG
TEKENMEKAAKYIQTIVTDYEAGQLFEGKVISIKEFGAFVEFAPGKEGMVHISKLSKQRV
DKVEDVVSIGDVVKVVCLGKDKMGRFSFSMKDVAE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaaagtttgaaatggaactggccggcagaacactgcgtgtagatgttgaccgt
gtggcaaaacaggcgaatggtgcagtgctgatgcattatggtgacacaactgtactgtgt
acagcaacagcatctgacaagccgagagaaggaattgatttcttcccactcagcgtagag
tataatgagagaatgtacgctgtaggaaagatcccgggaggatttaataagagagaaggt
aaagcatctgagaatgcgatcctgacagaccgtgtcatcgatcgtccgatgcgtcctctt
ttcccgaaagattatagaaatgacgtaacacttgagaaccttgttctttctgtagatcag
gactgcagcccggaacttacagctatgcttggtgctgcacttgcaacaagtatttctgat
attccgtttgacggaccgatctctacaacacaggttggactcgttgacggagagttcgta
ttcaacccgacagcagcacagaaggaagtatctgatcttgcattgacagttgcttctaca
aaggaaaaggttatcatgatcgaggccggtgcgaaggaagttccggaagcgaagatgatt
gaagcaatctttgcggcacatgatctgaaccagaaagtgatcgctttctttgacacgatc
gttgcagagtgtggaaagccgaaacatgagtatcagagctttgctgttccgcaggaactc
tttgatgcgatccaggagatcgttccggctgctgagatggaagaggctgtatttacagat
gacaaacagacaagagaagagaatatccgtgtgatcacagagagactcgaggaagcattt
gcagacaacgaagagtatcttgcgaagcttggtgaggctgtttaccagtatcagaagaag
acagtaagaaagatgatcctcaaagatcataagcgtccggatggtcgtgcaatcgatcag
atcagaccgcttgcagcagaagtagacctgatcccgagagttcatggttctgctatgttc
acaagaggacagacacagatctgcacaatgacaacacttgctccactttctgaagcacag
aagctcgacggtcttgatgaagcagagaagacaaagagatatatgcatcactacaacttc
ccgtcctactctgtaggagagacaagaccttccagaggaccgggacgtcgtgagatcgga
catggagcactggctgagagagcactccttccggtacttccaagcgagtctgagttccca
tatgcgatccgtacagtatctgagacatttgagtctaatggatctacatcacaggcaagt
gtctgcgcatccagtatgtcactgatggcagcaggtgtgccgatcaagtctgctgtagca
ggtatctctgcaggacttgtaacaggtgagacagatgatgattaccttgtactgacagat
atccagggactcgaggacttcttcggagacatggactttaaggtagcaggtactcacaaa
ggtatcacagcaatccagatggatatcaagatccacggactgacaagaccgatcatcgaa
gaagcaatcgctgctacaaagaaagcaagaacttacatcatggatgaagttatgagtaaa
gcaattgctgagcctagaaaagaagttggagagtttgcaccgaagattattcagatgcag
atcgatccacagaagatcggtgatgttgtcggacagcgtggtaagacaatcaatgcaatc
atcgacgagacaggtgttaagatcgacatcgatgatgaaggaaatgtatctatctgcggt
acagagaaagagaacatggagaaagctgcgaagtacatccagacaatcgttacagattac
gaagcaggacagctttttgaaggaaaggttatcagcatcaaagaattcggagcattcgtt
gagtttgcaccgggtaaagaaggaatggtacacatttccaagctttctaagcagagagtt
gacaaggtagaagacgttgtaagcatcggtgatgttgtgaaggttgtatgccttggtaaa
gataagatgggaagattcagcttcagcatgaaagatgttgcagaataa
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