Ruminococcus torques: RTO_23110
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Entry
RTO_23110 CDS
T02606
Name
(GenBank) DNA polymerase III catalytic subunit, DnaE type
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rto
Ruminococcus torques
Pathway
rto03030
DNA replication
rto03430
Mismatch repair
rto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RTO_23110
03430 Mismatch repair
RTO_23110
03440 Homologous recombination
RTO_23110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rto03032
]
RTO_23110
03400 DNA repair and recombination proteins [BR:
rto03400
]
RTO_23110
Enzymes [BR:
rto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RTO_23110
DNA replication proteins [BR:
rto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RTO_23110
DNA repair and recombination proteins [BR:
rto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RTO_23110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
CBL26806
UniProt:
D4M6E4
LinkDB
All DBs
Position
complement(2392277..2395750)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSFAHLHVHTEFSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREAKKQGIN
PILGCEVYVAPNSRFDREITGGDDRYYHLVLLAENEEGYANLTKIVSKGFVEGYYYKPRV
DKELLRKYHKGIIALSACLAGEVARFLTKGLYEEAKKTALEYQEIFGEGNFFLELQDHGI
PEQGLVNQQLFKMSEETGIELVATNDIHYTYAEDAKPHDILLCIQTGKKLSDENRMRYDG
GQYYVKSEEEMLRLFPYAKQALENTQKIADRCHVEIEFGVTKLPKYDVPDGYTSWEYLQK
LCYEGLEKRYGDPSEELKERLSYELETIHQMGYVDYFLIVWDFIKYAKDHGISVGPGRGS
AAGSIVSYCLEITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYERRQEVIDYVTRKYGK
DCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSISKMIPQELGITIDKALKMNPDLKKL
YDTDETVTNLIDMAKRLEGLPRHCSMHAAGVVICQKPVDEYVPLSRAADGTITTQFIMTT
LEELGLLKMDFLGLRTLTVIQNAVLLARRKQPELNINQIDYNDQKVLDYIGTGKTDGVFQ
LESAGMKGFMKELKPHNLEDVIAGISLYRPGPMDFIPQYIRGKNDSSSITYDCPQLEPIL
APTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKAAVMEKERKIFIYGDEETGVP
GCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAWLKYYFPVEYMAALMTS
VIDNPSKVSEYIYACRQMNIKILPPDINKGEANFSVDGGDIRYGLAAIKSIGRPVIKAIV
EDREELGLFQNLEDFITRLSAKNILNKRTIENLIKAGALDTLGGTRKQFMSIYVQIVDHV
TQEKKNSMVGQMTLFDLVSEDQKEEFQIRMPDVGEYSKETLLAFEKEVLGIYVSGHPLEA
YEEKWKKSISATTADFQLDEETGHTKVHDGAKEIIGGMITEKTIKHTKTNQMMAFITVED
LLGTVEVVVFPRDYEKNRDYLEVDSKVFVRGRVSEEDDKPSKMICEKIIPFERTKKELWI
QFPDKATFLDEEQIVYGYLADSDGDDEVMIYCAKERAVKKLPKNRNIGINEQILSRLMNH
FGEKRVKVVEKPIENIF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcacatttgcatgtccatacagaatttagtctgctggatggatcgaataag
ataaaagaatatgtgtccagagtcaaagaacttgggatgaacagtgcggcaattacagat
cacggtgttatgtatggtgtgatcgatttctatcgggaagccaagaagcaggggatcaat
ccaatccttggatgtgaagtgtatgtggctccgaattctcgttttgatcgcgagatcaca
ggaggagatgacagatattatcatcttgtgcttctggcagaaaatgaggaaggatatgcg
aatctgacgaagattgtttcgaagggatttgtggaaggttattactataaaccgcgagtg
gataaggaacttctgcgcaagtaccataaaggtatcattgctttaagtgcctgcctggca
ggtgaggtggcaagattcctgacgaagggattatatgaagaggcgaagaagacagcttta
gagtatcaggaaattttcggcgaagggaatttcttcctggagttgcaggatcatggaata
ccagagcagggacttgtcaatcaacagctattcaaaatgtctgaagagacaggaattgag
ctggttgctacgaatgatattcattatacatatgcagaagatgcgaagccacatgatatt
ctactttgtattcagaccggaaagaagctttcagatgagaatcgtatgcggtatgacggc
gggcagtattatgtgaagtcagaagaagagatgctacgtctgttcccttatgcgaaacag
gcgttggagaatacacagaagattgcggatcgatgtcatgtcgagattgaatttggtgta
acaaaacttccgaaatatgatgtgccggatggttatacttcctgggaatatctgcagaag
ctttgctatgaaggattggaaaagcgttatggtgatccttcggaagaattgaaagagcgt
ttgtcttatgaattggaaacaatccatcagatgggttatgtagactatttcctgatcgtg
tgggattttattaaatacgcaaaagatcacggaatctcagtaggaccgggacgtggatca
gccgcaggaagtatcgtgtcctattgtcttgagattactacgattgacccgatccgctat
cagctgctgtttgaacgtttcctgaatccggaacgtgtatccatgcccgatatcgacgtt
gacttctgttatgagagacgtcaggaggttattgattacgttacaagaaaatatggaaaa
gactgtgtggctcagatcgttacattcggtaccctggcagcacgaggtgtgatccgtgat
gttggacgtgtaatggatctgccatatgcttatgtggattctatttccaaaatgattccg
caggagcttggaatcacaattgataaagctctgaaaatgaatccggatctgaaaaagtta
tatgatacggatgagacggtgacaaatctgatcgatatggcgaagcgtttggaaggacta
ccgagacattgttctatgcatgccgccggtgttgtgatctgtcagaagccggttgatgag
tatgtacctctttcgagggcagcagacggaacaatcacaacacagtttattatgacaacg
cttgaggaacttggacttctgaaaatggacttcctgggccttcgtacattgactgtgata
cagaatgcagtgctgcttgcaagaagaaagcagccggaactgaatatcaatcagatagat
tacaatgatcaaaaggtgctggattatatcggaaccggtaagacagatggtgtgttccag
cttgagagtgccggaatgaaagggttcatgaaggaactgaagccgcataacctggaagat
gttattgccggaatttcgctgtatcgtcctggtccgatggatttcattccgcagtatatc
cgaggaaagaatgacagttcttctatcacatatgattgcccacaactggagccgatcctt
gcccctacttatggatgtattgtctatcaggagcaggttatgcagattgtacgagatctt
gcaggatactcacttggacgaagcgaccttctgcgtcgtgcgatgtcaaagaaaaaggcg
gcagtcatggagaaagaacgtaagatctttatttatggtgatgaggagacaggcgtacca
ggatgtataaagaatggaattgatgaacagactgcaaataagatttatgatgaaatgatc
gattttgcaaaatatgcgttcaataagtctcatgcggctgcatatgcagtggtttcttat
cagactgcatggctgaaatattatttcccggtagaatatatggcagcgcttatgacatca
gtcattgataatccgtctaaggtatctgagtatatttatgcatgtcgtcagatgaatatt
aagatcctgccgccggatattaataaaggtgaagcaaacttctctgtagatggcggggat
atccgttatggacttgctgcaatcaaaagtatcggaagaccggtgatcaaagcaatcgtg
gaagacagagaagagcttgggttgttccagaacctggaagatttcattacccgtctttca
gcaaagaacatattaaataaacgtacgatagaaaatctgatcaaggcgggggcattggat
acgcttggcggaacaagaaaacagttcatgagtatctatgtacagatcgtagatcatgta
acccaggagaaaaagaactctatggttggacagatgacattgtttgatctggtgagtgaa
gatcagaaagaagaatttcagatcaggatgcctgatgtgggagaatactccaaagaaaca
cttctcgcatttgaaaaagaagtacttggaatctatgtcagcggacatccgcttgaggcg
tatgaggagaagtggaagaaatccatttctgcgacaacggcggactttcagctggatgaa
gagaccggtcatacaaaagtgcatgatggggcgaaagaaattattggtggaatgatcaca
gagaagaccataaagcacacaaagacgaatcagatgatggcatttattacggtagaagat
cttttgggaacggtagaggttgttgtgttcccgcgagattatgagaagaacagagattat
ctggaagtagatagtaaggtatttgttcgcggaagagtttcggaagaagatgataagccg
agtaagatgatctgtgagaaaattatcccatttgaacggacgaaaaaggaattgtggatt
cagtttcctgataaggcgacatttctggatgaggaacagattgtctatggatatctggca
gattcagacggagatgatgaagttatgatctactgtgcgaaggaacgtgcggtgaaaaaa
ctgccgaaaaataggaatatcggtataaatgaacaaattttaagcagattgatgaatcat
ttcggcgagaagagagtaaaagtagtggaaaaacctattgaaaacatattctaa
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