Ruminococcus torques: RTO_24480
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Entry
RTO_24480 CDS
T02606
Name
(GenBank) Pseudouridylate synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
rto
Ruminococcus torques
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rto03016
]
RTO_24480
Enzymes [BR:
rto01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
RTO_24480
Transfer RNA biogenesis [BR:
rto03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RTO_24480
Prokaryotic type
RTO_24480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
CBL26931
UniProt:
D4M6R9
LinkDB
All DBs
Position
complement(2543207..2543989)
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AA seq
260 aa
AA seq
DB search
MQNIKLTLQYDGTRYLGWKRPEKDHNDRTVSYKIENVLEKVTGTPVTLFSGVRTEPGVHA
RNLTVNFLTESQLTPAEFKTVLNQYLPQDIAVLDAVSTPERFRADLNAREITYEYAMDLS
PIYDLFHKNYRGRLTDLLSDSLFDLPPEQTAELPNILLMETAAHSLLGTHDFKHFSSIRK
KKGTEKEIKTITFVTEESTLYIRMTANDFLYQMAPFILGTLLDIGIGKRPVECINAILEG
KEKPSASCDTKGLILYDIVY
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatattaaattaacactccaatatgacggtacacgttatcttggttggaaacgc
ccggaaaaagaccacaatgatcgcacagtatcttataaaattgaaaatgtattagaaaaa
gtaacaggaactcctgtcactttattttccggagtccgaacagaaccgggagttcatgct
cggaatctcacagtcaattttcttacggaaagccaactgactcctgcagaatttaaaact
gttctgaaccagtatcttccacaggatattgccgttttagatgcagtatcaacacccgaa
cgctttcgagcagacttgaatgcacgcgagatcacttatgaatatgccatggatttatca
ccgatctatgacctgttccacaaaaactatcgcggtcgattaactgatctgttatcagat
tcattatttgatctgccacctgaacaaacagcagaacttccaaatattcttcttatggaa
accgctgcccactcattacttggaacgcatgattttaaacatttctcttcgattcgaaaa
aagaaaggaaccgaaaaagaaataaaaacaattacttttgtcacagaagagtctacgctt
tatattcgtatgacagccaatgattttctctatcagatggctccatttattctgggaacg
cttttggatatcggcatagggaaaagacccgtcgaatgtatcaatgcaatcctggaagga
aaggaaaagccttctgcatcctgcgacacaaaaggcttgatcttatacgatatcgtttat
taa
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