Ruminococcus torques: RTO_25580
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Entry
RTO_25580 CDS
T02606
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rto
Ruminococcus torques
Pathway
rto02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RTO_25580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rto03021
]
RTO_25580
Transcription machinery [BR:
rto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RTO_25580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
Sigma70_r1_2
Sigma70_r4_2
Exonuc_VII_L
Porin_5
Phage_terminase
Skp1
PM1101
COG2p_C
HrcA
HTH_GRAD
Dark_CARD
DUF722
GerE
Motif
Other DBs
NCBI-ProteinID:
CBL27028
UniProt:
D4LZ18
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All DBs
Position
2663178..2664020
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AA seq
280 aa
AA seq
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MEKDLNLPEGTEVTEPLKIYLNEIGQIPLLSEEEERDLGCKSASGDEDARRKLEEGNLRL
VVSLAKHYTGRGITLMDLIQEGNIGLMHAAEKYDYTKENRFSTYASWWIKEAMQRAIDQQ
SREIRVPVHVAENMKKVQKISKDLQQKFGREATPEEIAEEMKDKSPEFVKEILSYLQNPV
SLETPVGEDGENNLGDMVEDKDATTPEDAMNQLVQKEEVQELLESLNDRERQVIRLRFGL
EDGKTHTLEEIGDELNVTRERVRQIEARAMEKLRSKATKL
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagacttaaatcttccggaaggaacagaagtaacagaaccgctgaaaatctat
ctgaatgagattggacagatccctttgctgtcagaagaagaggaaagggaccttgggtgt
aaaagtgcttcaggagatgaggatgcaagaagaaagctggaagaggggaatctacgcctg
gtggtatctctcgcaaaacattatactggaagagggattacactcatggatctgatccag
gagggaaatattggtctcatgcatgcagcagagaaatatgattatacaaaggaaaatcga
ttttccacatatgcatcctggtggatcaaagaagcaatgcagcgggcaattgatcagcag
tcacgagaaatccgtgtgccggttcatgttgcagagaatatgaagaaagtacagaaaatt
tcaaaagatcttcagcagaaatttggaagagaggctacaccggaagagatagcagaagag
atgaaggataaatcaccggaatttgtaaaagagattttgtcatatcttcagaatccggtt
tcactggaaactccggtaggagaagatggggagaataatcttggtgatatggttgaagat
aaggatgcaacgacgccggaagatgctatgaatcagcttgtgcaaaaagaagaagtacag
gaattgttagagtcccttaatgatagagaacgtcaggtgatccgtttgagatttggtctg
gaagatggaaaaacacatacgttggaagaaatcggtgatgaactgaatgtgacaagagaa
cgcgtacgccagattgaagccagagcgatggagaaacttcgcagcaaagcgacaaaactg
taa
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