Ruminococcus torques: RTO_26910
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Entry
RTO_26910 CDS
T02606
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rto
Ruminococcus torques
Pathway
rto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RTO_26910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rto03019
]
RTO_26910
03400 DNA repair and recombination proteins [BR:
rto03400
]
RTO_26910
Enzymes [BR:
rto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RTO_26910
Messenger RNA biogenesis [BR:
rto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RTO_26910
DNA repair and recombination proteins [BR:
rto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RTO_26910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CBL27151
UniProt:
D4LZE1
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All DBs
Position
2806344..2808305
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AA seq
653 aa
AA seq
DB search
MGSNSRKTQILKEIFGYDSFRKGQEEIVDQILNGRDVLAIMPTGAGKSLCYQVPALLMSG
ITIVVSPLISLMIDQVKALNEAGVHAAYINSALTERQITKALELAAAGRYKMIYVAPERL
LTPRFLDFACHTELSMVTIDEAHCISQWGQDFRPSYVKITEFIRQLPRRPVVSAFTATAT
QKVREDILEVLDLESPYINVSGFDRENLYFEVRPARGKKDAIKEYLTQHREDSGIIYCAT
RKNVDELYLELQNAGFSVGRYHAGMGTEARNESQEDFIYDRTEIMIATNAFGMGIDKSNV
RFVLHYNMPQSMENYYQEAGRAGRDGEPAECILFYSPQDIMINQLLLDSKEQIGEYTEEE
LRVIREQDVLRLRKMSNYCTTSMCLRKYILNYFGQETEEHCGNCSNCLEEFVELDVGEIA
ADVIECVRESRQRYGMTMILSTLAGANTAKIRSAGMNELSIYGRQSKCSQQRLKDVVYTL
LEHGYLQQSADRYAILKLTDRSEELLKSRELKLRCKKSELTEKKKSGSGKKASHRKGESF
GNLTDKSRELFEELRSVRYSLAKKKGIPPYMVASDRTLHEMCVLVPLKKEELLEVHGMGL
KKYEQYGAVFLDKIQEVTAGDKKGYGISEDADGTDAVQNQNPLDIGPFGSVEN
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcaacagtagaaaaacacagatattaaaagaaatttttggatacgattctttc
cgtaaaggacaggaggagattgtagatcagattttgaatggaagagatgtgttggcaatc
atgccgaccggagcgggaaagtcactttgttatcaggttccggcacttctgatgtctggg
atcacgatcgtagtatcaccgctgatttcattgatgatcgatcaggtgaaggcactgaat
gaagcaggagttcatgcagcgtatattaacagtgcactgacagaacggcagattacaaaa
gcattagaactggcagcggcaggcagatataagatgatctatgtcgctccggaacgcttg
ttgacaccacggtttctggactttgcatgtcatacagaactttctatggtgacaatcgat
gaggctcactgtatttcccagtggggacaggatttccgcccaagttatgtgaagatcaca
gaattcatccgccagcttccaagacgcccggtcgtcagtgcatttacagcaacagcaaca
cagaaagtaagagaagatattcttgaagtacttgatcttgaatctccttatataaatgta
tccggttttgacagagagaacctttacttcgaagtaagaccagcgcgtgggaagaaggat
gcaattaaggaatatcttacacagcacagagaagatagtggaattatttactgtgcaaca
agaaaaaatgtagatgaactctatttggaattacagaatgccggattctctgtcggaaga
tatcacgcaggaatggggacagaggcaagaaatgaaagtcaggaagatttcatttatgac
aggacagagattatgatcgcaacgaatgcatttggaatgggaatagataagtccaatgtt
cgttttgtacttcattataatatgccgcagagcatggaaaattattaccaggaggcaggc
agagccggacgagacggagaaccggcagaatgtatccttttctattcaccgcaggatatc
atgatcaatcagctcctgctggatagtaaagagcagattggagaatacacagaagaagaa
ctccgggtgatccgggaacaggatgttctccggctgcgtaagatgagtaattattgtacg
acaagcatgtgtcttagaaaatacatattgaattatttcggacaagagacagaagaacat
tgtgggaattgttccaattgtctggaagaattcgtagagcttgatgtcggagagattgcg
gcagacgtgatcgagtgtgtgcgcgaatccagacagagatacggtatgacaatgatcctt
tccacactggcgggagcgaatacagcgaagatcagaagtgcagggatgaatgaactttcc
atttatggaagacagagtaaatgttctcagcagaggctgaaagacgtagtttatacactg
ctcgaacacggataccttcaacagagcgcagatcgttatgcgatcctgaaactgacagac
cggtcagaagaattactgaaatcgagagaattgaaacttcgctgcaagaagtcagaactt
acagaaaagaaaaagtccggaagtggaaagaaagcgtctcatagaaagggagagagtttc
gggaatcttacagataaaagccgagaattattcgaagaattgcgctctgtgcgttattct
ttggcaaagaaaaaaggaattccgccatatatggttgcttcagatcgtacattacatgag
atgtgtgtacttgttccattgaaaaaagaggaactgcttgaagtacacggtatgggactt
aagaaatatgaacagtacggagcagtttttcttgataagattcaagaagtgacagcaggt
gataaaaagggttacggtatatcagaagatgctgatggaacagatgcagttcagaaccag
aatcctctggacatcggaccatttggaagcgtagagaattaa
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