Rhincodon typus (whale shark): 109910456
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Entry
109910456 CDS
T06055
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
109910456 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109910456 (myo5c)
04131 Membrane trafficking [BR:
rtp04131
]
109910456 (myo5c)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109910456 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rtp04812
]
109910456 (myo5c)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
109910456 (myo5c)
mRNA cycle factors
P-body specific factors
109910456 (myo5c)
Membrane trafficking [BR:
rtp04131
]
Others
Actin-binding proteins
Myosins
109910456 (myo5c)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
109910456 (myo5c)
Cytoskeleton proteins [BR:
rtp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
109910456 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
Par-4_C
AAA_16
Csm1_N
AAA_22
Motif
Other DBs
NCBI-GeneID:
109910456
NCBI-ProteinID:
XP_020365231
LinkDB
All DBs
Position
33:19299020..19382067
Genome browser
AA seq
1748 aa
AA seq
DB search
MAVAELYTKYNSVWIPDPDEVWQSAEITKDYKKGSDVLFLQLEDGTELEYPIDPVKTQLP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVDSKLIYTYCGIILVAINPYKEIPIYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARKNRNQSIIVSGESGAGKTVSARYAMRYF
ATVSKSSSKACVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFNNQYRIIGANMR
TYLLEKSRVVFQAENERNYHIFYQLCASADRPEFKHLKLAPAENFSYVNMGGNTVIDGLN
DRTDFIETQKTFSLLGLNKDFQMDIFKVLAGILHLGNVGIKAVGDDKSSVKHDDYHLKVF
SELLEIKLEEMAHGLCHRKIATTSDTVIKPMTKVQAINARDALAKHIYAHLFSCIVDHIN
EALQFSGKKHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQDEYMKE
DIPWALIEFNDNQPCIDLIEAKMGILELLDEECLLPQGTEENWLQKLQNNYLNKNPLFEK
PRMSSKAFIILHFADKVQYECDGFLEKNRDTLYEELIDVLKKSKLSLLADFFQENEPSTG
SLKANIKVRPARPGFKSFNKQHRTTVGSKFRNSLHLLMETLNATTPHYVRCIKPNDLKLQ
FEYDSKRVVQQLRACGVLETIRISAQSYPSRWTYFEFFSRYRILMSQQDLALDDKKQICK
EVLKHLIQDPNQYQFGKTKIFFRAGQVAYLEKLRADKLRAASVTIQKNLRCWIQRKKFLK
MKRAAIIIQQYVRGERAIRHVLNAATLKQSWGAVIIQKHWRRFLVSRRYQLILMATIRIQ
SFTRGWLARRQYKKMLQDQKALVIQKHVRAWLVRRRYQSIRRFVLNIQLSFRVKQLHKKL
DEQSKENNGLLERLTHLSTIHSADLNKYQKLEEELQKTVTQKQLIEEQVKKSKGQTEQTL
SEFRKQTLSLQAQNQKLEKQHQEQTQEMKEKITEITRQHLSDLEREEQQRRTLENNFETQ
KESYEQQIKALIDEVKHLQEDRIQLQEQVEAEYLINDGLRKDLAQLADEALVIPKLKGDI
AILEMKSQDLEMCLQKQRKEMREKVEEITKQLLGGLEGEELRKRLSPEDMEQLNEDGELW
LAYEGLKRATRVMEMHIQSQKENYEKEIEELSFRIDQLCEETTHLQQKVQAENDTNETIR
QELTRLAKENLVIPDFKLQILELQKQKQDIENHLQGQVVEMKEKMEEVTDQLHGNLKEEG
FQRRLLEIQKANCAKENVELLAKVRKLENENHQLLNWTQTDSAASNRMKQEASQLTLENW
DLEERLDQKEKQIRKLQNQIKSLTKNIDRGHRANGKVSPVVKKEFLGMLECKAEDEEKLI
KNLILDLKPRGVVVNMIPVLPASILFMCIRYTDDGNDAEMLKSLMNSLLDGIKKVTKNHD
EDFEMLSFWLSNSVHFLNCLKQYSGEEEFMKHNTPQQNNQCLKNFDLSEYRQILSDLAIH
IYQQLIQVMEDDLQPMIVPGMLEHESLQGISSMKPTGLRKRSSSYREEVDKYTISSILQQ
LSYYFTTMCQHDMDTDLIKQAVKQLFFLIGTITLNNLFLRKDMCSCRKGMQIRCNISYLE
EWLKEKNMQSSNAKETLEPLSQAAWLLQVNKITDDDVKEICEKCSALSAVQIVKILNSYT
PIDDFEKRLAPSFVRKVQTQLNSRGDGSTLIIDAKYRFQVTFPFSPSPQALETIQIPSSF
KLNFLTRI
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagaactgtacaccaagtataatagtgtttggattcctgaccctgatgaa
gtctggcaatcagctgagatcactaaggactataagaagggatcggatgtactgtttctg
cagttagaagatggcactgaattggagtatccgattgatccagttaagacacaactgcca
cctttacggaatccagacatactggtgggtgaaaatgacctcacggcactcagctatctc
catgaacctgcggttttgcataacctcaaagtgcgctttgtggattccaaactcatctac
acttattgtggtattattcttgtggctattaacccttacaaagagataccaatctatgga
gatgccattatccatgcctacagtgggcagaatatgggcgatatggatcctcatatcttt
gccgtggctgaagaagcttacaaacaaatggccaggaagaatagaaaccagtctattatt
gtgagtggagaatcgggtgcagggaagactgtatctgctcgatatgcgatgaggtatttt
gctactgttagtaagtccagtagcaaggcttgtgtagaagataaagtccttgcatcaaac
cctataacagaggcaatcggaaatgcaaagacgacacgaaatgacaatagcagccgtttt
ggtaaatacacagagatcagttttaataaccagtatcgaatcattggtgcaaatatgaga
acttacttactggaaaaatcaagggtagtgtttcaggctgaaaatgaaagaaattaccat
atattctaccagctttgtgcttctgctgatcgacctgagttcaagcatctgaaattagct
cctgcggagaactttagttatgtgaacatgggtggaaatactgtgattgatggtcttaat
gaccgaactgacttcattgaaacacaaaaaacattttcgttgctgggcttgaacaaagac
ttccagatggatatcttcaaagtgttggcagggattctgcacctgggaaatgttggaata
aaagctgtgggtgatgacaaatcctcagtcaaacatgatgattatcacctgaaagtattt
tctgaactcttggagatcaagctggaggagatggctcatggactgtgccacagaaaaatt
gctactacctcagacactgtaatcaaacctatgaccaaggttcaagcaatcaatgctaga
gatgctttggctaaacacatctatgctcatctgttcagctgcattgtggatcacattaac
gaggctttgcagttttctggcaagaagcatacatttattggcgttctggacatttatggg
tttgaaacctttgacgtgaatagctttgaacagttctgtataaattatgccaatgaaaaa
ctgcagcaacaatttaatttgcatgtgtttaaactggaacaagatgaatacatgaaagaa
gacattccatgggcactgatagaattcaatgacaaccaaccttgcattgatctgattgaa
gctaagatgggcatactggaactattggatgaggagtgcctgttgccacaaggaacagag
gaaaactggcttcagaaactgcagaataattacttaaataaaaatcccctctttgagaag
cctcgaatgtcgagtaaagccttcatcatcctgcattttgctgacaaggtgcaatatgaa
tgtgacggattccttgaaaagaacagggacacgttatatgaagaattgattgatgtactg
aagaaaagtaagttgagtctcctagctgatttctttcaagaaaatgaaccatctacaggg
agcttgaaggcaaacattaaagtcaggcctgcaagaccagggtttaaatccttcaacaaa
caacaccggacaactgtcggcagtaagttccgtaattctctgcatctgctaatggagacc
cttaatgctacaacacctcactatgtgcgttgcattaagccgaatgatttgaagctgcag
tttgaatatgactcaaagagagttgttcaacagcttagagcctgtggtgttctggaaact
attcggattagtgcgcagagttatccttccagatggacttactttgagtttttcagtcgc
taccgcattctgatgtcacaacaagaccttgcattagatgataaaaaacagatatgcaaa
gaagtcttgaagcatttaattcaggatccaaaccaatatcagtttggtaagacgaagatt
ttctttcgcgcggggcaagtggcatatttggaaaaactgcgcgcagataaactgagggct
gcttcagtcactatacagaagaatctgcgatgctggattcagcggaaaaaattcctcaag
atgaaacgagctgctatcatcattcagcaatatgttcgtggggagcgtgccatacgacac
gtattgaacgcggctactttaaaacaatcctggggtgcagttatcatccagaaacactgg
cggcgatttttagtgtctcgtcggtatcagctcattctcatggctaccatcagaattcag
tctttcacgcgaggctggttagcaagaaggcaatataagaagatgctgcaggatcagaaa
gcattagtaattcaaaaacatgtccgtgcttggttggtaagacgtagatatcaaagtata
cgacgttttgttttgaacatccagctctcgtttcgtgttaaacagctccacaagaaactg
gatgaacagagcaaagagaacaatgggttgttggaacgtttgacacatctgtccacaatt
cactcagccgatctcaacaaatatcagaaacttgaggaggagctgcagaaaacagtgaca
caaaagcagctcattgaggagcaagtaaagaaatccaagggccaaactgagcagacgctg
tcagagttcagaaagcaaacgttatcactccaagcacaaaaccagaaactggagaagcaa
catcaagaacagacccaagaaatgaaagaaaaaattactgaaatcacacgccagcatctc
agtgatttagaaagggaagaacagcagaggagaacattggaaaataattttgagacccag
aaggagagctacgaacagcaaataaaagcactgattgatgaagtcaagcatctacaagag
gacagaatccagttgcaggagcaggttgaagcggagtacctgataaatgatggtctgcgc
aaggatttagcacaactggctgatgaagcactagtaattccaaaacttaaaggagacatt
gcaattcttgaaatgaaaagccaagatttggaaatgtgcttgcaaaagcaaagaaaagaa
atgagagaaaaagtcgaagaaattacaaaacagctccttggaggtttagagggagaggag
ctacgaaagaggctttctccagaggatatggaacagctaaatgaagatggagagctctgg
ttggcatatgaaggattgaaaagagctaccagagtgatggaaatgcacattcagtctcag
aaagaaaactacgaaaaagaaatcgaggaactcagttttagaattgatcagctctgtgaa
gagacaacacatctccaacaaaaggtccaagcagagaatgacactaatgagactattcgg
caggaactgaccagactggctaaagaaaatctggtcataccagatttcaaactccaaata
ttagagctgcaaaaacagaaacaagacattgagaaccacttacaaggacaggttgtggaa
atgaaagaaaaaatggaagaagttactgatcaattacatggcaatcttaaagaagaagga
ttccaaagaagattgttagagatccagaaagctaactgtgccaaagaaaatgtggaatta
cttgctaaagtgagaaaacttgaaaatgagaatcatcaactactgaattggacccaaact
gatagtgcagccagtaacagaatgaaacaagaagcatctcaattaacattggaaaactgg
gatctggaagaacgtcttgaccagaaagaaaagcaaatcaggaagttgcaaaatcagatt
aagtccttaaccaaaaatattgatagaggacatcgagccaatggaaaagtgagtcccgtt
gtaaagaaggagttccttggcatgttggagtgtaaagctgaagatgaagaaaagctcata
aaaaatctaattctggacttaaaaccgcgaggtgtggttgtcaatatgattccagtactg
ccagcaagcatcctgttcatgtgtatacgttacaccgatgatggtaacgatgctgaaatg
ctgaaatccctgatgaactctctacttgatggtatcaaaaaagtcactaagaatcacgat
gaagattttgaaatgctgtcattttggctttccaacagtgtccactttcttaactgctta
aagcagtacagtggagaggaggaatttatgaagcataacactcctcaacaaaataaccag
tgtctgaaaaactttgacctgtctgaatatagacagattctgagtgacttggctattcac
atttatcaacaactcattcaagtgatggaagatgaccttcagccaatgatagtaccagga
atgctggagcatgaaagtctgcaaggtatttcgagcatgaagccaactggacttcggaaa
aggtcttcaagttatcgagaagaagtggacaagtacacaatatcttccattttgcagcag
ctgagctactacttcactactatgtgtcagcatgacatggacacagatctgatcaagcag
gcagttaaacagctcttctttctaattggaacaatcacccttaataacctcttcctgcgc
aaagacatgtgctcatgcagaaaaggaatgcaaataagatgtaacattagttacttggaa
gagtggctgaaggagaagaatatgcagagcagcaatgccaaagaaaccctggaaccactc
tctcaggctgcctggctacttcaggttaacaagatcacagacgatgatgtgaaggaaata
tgtgaaaaatgttcagctctctcagctgtgcagattgtcaagattttgaactcctatacg
ccaattgacgattttgagaaacgtttggctccatcctttgtacgcaaagttcagacacaa
ctgaacagtcgtggagatggatcaacattgataattgatgccaaatatcgttttcaagtg
acttttccattcagtccatctccacaagcactggaaacaatccagattcccagtagcttc
aaattaaacttccttactcggatctga
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integrated database retrieval system
