Rhincodon typus (whale shark): 109910471
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Entry
109910471 CDS
T06055
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109910471 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109910471 (cpsf4)
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109910471 (cpsf4)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109910471 (cpsf4)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109910471 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCCH_12
zf-CCCH_DUS3L
zf-CCCH_3
zf-CCCH_RBM22
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
109910471
NCBI-ProteinID:
XP_048465709
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All DBs
Position
21:complement(42141156..42150446)
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AA seq
219 aa
AA seq
DB search
MCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFL
HIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPM
GTGVDQPPLQQQQQILQKQNLTPFLQRSSSLVQIPSTNIIVGQQKTNTQSSGSVQQSQFQ
TLSNRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccttttcgtcacatcagcggcgagaagacagtggtgtgcaaacactggctgagg
ggcctctgcaagaaaggagatcagtgtgaattcttacatgagtatgacatgaccaagatg
cccgagtgctatttctattccaaatttggagaatgtagtaataaggaatgtccatttcta
cacattgaccctgagtccaaaatcaaagactgcccctggtatgaccgaggattttgtaaa
catggtccactgtgcaggcaccgacacacacggcgagtcatctgtgttaactatctggta
ggattctgtcctgaaggccccagctgtaaattcatgcaccctcgtttcgagctgccaatg
ggaactggtgttgatcaaccaccgttacagcaacagcaacagatactccaaaagcagaat
cttactccgtttcttcagcggtcatcctctctggtacagattcctagcaccaacataatc
gtagggcagcagaaaacaaacacacaatctagcggatcagtgcagcaatctcaatttcag
acattgtcaaatcgaggccctagacctttggagcaagtcacgtgttataagtgtggtgag
aaaggacattatgctaaccgatgtaccaaaggacacttggcatttcttagtggtcagtag
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integrated database retrieval system
