Rhincodon typus (whale shark): 109910601
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Entry
109910601 CDS
T06055
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rtp04812
]
109910601 (katnb1)
Cytoskeleton proteins [BR:
rtp04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
109910601 (katnb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Katanin_con80
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_RIG_2nd
WD40_RFWD3
eIF2A
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
WDR54
Beta-prop_LRRK2
Beta-prop_DCAF12
RMC1_N
Beta-prop_IP5PC_F
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_VPS8
Ge1_WD40
VPS8_N
Motif
Other DBs
NCBI-GeneID:
109910601
NCBI-ProteinID:
XP_020365405
LinkDB
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Position
15:complement(52864944..52923028)
Genome browser
AA seq
657 aa
AA seq
DB search
MAASGPTKITWKLQEFVAHAGNVTCLVLGKNSGRLLATGGEDCRVNLWSVSKPNCIMSLT
GHNTPVECIQFKDSEELVVAGSQSGSLRIWDLEAAKILRTLSGHKANICSLDFHPFGEFV
ASGSMDTNVKLWDIRRKGCVMTYKGHTNAVRCLRFSPDGRWIAAAGDDSTVKLWDLSAAK
ILTEFTDHTGPVNIVEFHPNEYLLASGSSDRTIKFWDLEKFKMVSCTEVESTPVRCILFN
PDGCCLYSGSQDSLHVYGWEPPRCFDVLPVNWGRAADLAICSNQLIGASFSQVTVSTFVV
DLNRVKKTGSIIQGVVEDEKLYNLPVTKGAVLRRNYERPLTTCSRPQSKVKEEPESEGRI
PSGEEDKDDKESTAEIRNPEEYKEIFQPQNAIARTPPRRTDPFPAPPEDDTVAVKEAEKV
TAPTEMHSPVMKRVQADQLNFPPTAASTPVNQPEAPIIPIAKNEPIGLKVADFLPPQNNK
LADLSDEDAVSQIRKGHDTMCVVLTSRFKNLDTVRAVWTTGDVKTSIDSAVTMNDLAVIV
DILNIINLKPALWKLDLCPSIIPQIDKLLQSKYESYVQTGYTSLKLILQRFGPLMADNLV
TPPSIGVDITREERHQKCKLCYKQLKNLLPILQSKAGLPGRQGSAFRELQLLMAAFE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttcggggccaacgaaaatcacctggaagctgcaggagtttgttgctcatgct
ggtaatgtaacctgtttggtgctggggaagaattcaggcagactattggcaactggtgga
gaggactgtcgggtgaatttgtggtcagtcagtaaacctaactgtattatgagtcttaca
ggtcacaacacaccagttgagtgtattcagtttaaagattctgaggagttggttgttgca
ggctcacaatctggatcactaagaatatgggatttggaagcagcaaagattcttcggaca
ctgtcgggacacaaagccaacatctgcagtttagacttccatccttttggggagtttgtg
gcctctggctctatggacaccaatgtaaagttgtgggacattcgaagaaaaggttgtgta
atgacctacaagggtcacacaaatgctgtgcgttgtttaagattcagtcctgatgggcgg
tggattgctgctgctggggatgatagcacagtcaagctgtgggatttgtcagcggcaaaa
attctaacagagttcacagatcacactggacctgtaaacattgtggagtttcaccccaat
gagtatctgctggcttcaggaagctctgacagaacgataaagttttgggatcttgaaaag
tttaagatggtgagctgcacggaagtagagagcactcctgtcaggtgcatcttattcaac
ccagatgggtgttgtctctatagtggttctcaggattctttgcatgtttacggctgggaa
cctccccgctgttttgatgtactgccagttaattggggtagagcagcagaccttgccatc
tgttccaatcaattgattggagcttcattcagtcaggtgactgtctcgacatttgtagtg
gatctgaatcgtgtgaagaagactggttctattatccaaggtgtagttgaggatgaaaag
ctgtacaatctaccggtgacaaaaggagctgtgctcagacgcaactatgagaggccacta
actacctgcagtaggccacaaagtaaagtgaaggaggagccagaaagtgaagggcgcatt
ccaagtggggaagaggataaggatgacaaagaatcaacagcagaaattcgaaacccggaa
gaatacaaggagatcttccaaccacaaaatgccattgcacgaactccacctcggaggact
gatccctttcctgctcccccagaagatgatactgttgcagtgaaggaagctgagaaagtg
actgctccaacagagatgcattctcctgttatgaaaagggtgcaggcagaccagctgaat
tttcctccaacagcagcttccactcctgtcaatcagcctgaagcaccaataatcccaatt
gctaaaaatgagcccattggattgaaggtggcagactttctcccacctcagaataataaa
ctggctgatttgagtgatgaagatgctgtgagccaaatccggaaaggacatgacactatg
tgcgtggtattaacgagtcgattcaagaatctagacactgtgagagctgtgtggaccact
ggcgatgtcaagacctccatagactcagcagtgaccatgaatgacttggcagttattgtg
gacatcctgaatattataaatctcaaaccagccttgtggaaacttgacttgtgcccttca
attattcctcagattgacaaactgttgcagagcaaatatgagagctatgtgcagactggt
tatacttcccttaagttgatcttgcagcgatttggacccttaatggcagacaatctagtg
acaccaccctctattggggttgacataacacgtgaagaaaggcaccagaaatgtaagctc
tgttataagcagttaaaaaacctgcttccgatacttcagagtaaagcaggattgcccggc
cgtcaaggcagcgcttttcgtgaactgcaacttctgatggcagcttttgaatga
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