Rhincodon typus (whale shark): 109910603
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Entry
109910603 CDS
T06055
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated cation channel beta-3
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
109910603
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtp04040
]
109910603
Ion channels [BR:
rtp04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
109910603
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Trypan_PARP
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
109910603
NCBI-ProteinID:
XP_048461965
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Position
15:52634705..52808434
Genome browser
AA seq
1319 aa
AA seq
DB search
MSRMFTWIAKVAPQLPQPVKHLEIRSEVKSSSQPAEEPEEEKTENFTENADQVSLPKNET
DICSNPGETQAEPDQVPLPCTETSSGGGVLVWIAQNLSRFIPQHLGSSTLPRPAPAESEK
EIEIKEEEPSTAWXFLLMVTVIPSPDPAPAPAPDPTPAPDPTPSQIPAQAPALIPESVPA
PDDQPLSQPSPVVENPLVQDQRDEGRSGGMFRWFVEGLEKVLPQPEGKSKPTNLNMAAAE
AAIAPQEEKEEPAKPQTEQSIAETMPEPAAKPEPEPEPEPEPEPEPEPEPKAEVVVTPKE
ATEQQTEQTDTDCIVNVIEMPHSSANGSSMFGWMTQSLGKVIPKPVGSSVPVTTTVKMEQ
APQETKVPVEEKESQLNVTDVKEEVPKAVTIIEVVPADPNPDSRVKEEKQPAGEPITKTS
SEEAKSVFSWLAKGLGNVVPQPVIKSQLIKENDRTTAACHAEEIPVCIPKEMELVDIESD
WDEEVRYLDAETQTSECEALAQITKQTTATDVTLIKQSDETPEEEEERQLWSITEEEEVD
MEIVKVCEGTKSCEDLPSEEAEAVCKRTNSSEDQSTAELMQICEEAKTDDGLSTALSLQV
YEAAKSSEGLSRAESKSNQENVDEPSHESPVQAWNSQTNLQVDDSSRDKQGSTTSITSAI
VNERLQELVRSFKERTELVKEKLIDPDASEDEGSPTASPTKKAMEAPPPPPPPPREEEKE
EEEEEHYCEMMCCRFKTQPWIRRIRGLGFPSSVDPFSNPMYVLWLSIVVFAWNWNVWLIP
VRCTFPYQTPDNVHLWLLMDYFCDLIYVIDIAFFQSRLQFVQGGDIITARKPMRENYMKT
PKFRMDLVSLLPLDILYIKLGFRPVLRFPRLMKYMTFLEFNDRLEAIMSKAYIYRVIRTT
VYLLYSLHINACLYYWASDYEGIGATKWVYDGEGNSYMRCYYWAVKTLITIGGLPDPQTV
FEIFFQLLNYFTGVFIFSIMIGQMRDVVGAATAGQTYYRNCMDNTVKYMNSYRIPRFVQN
RVRKWYEFTWESQGMLDETELLVQLPDKMRLDIAIDVNYSIVSKVALFQGCDRQMIYDML
KRLKSVVYLPGDYVCKKGEIGREMYIIKAGEVQVVGGPDGKTVFVTLRAGSVFGEISLLS
VGGGNRRTANVVAHGFANLFILDKKDLNDILTHYPDSQKLLRKKAKKLLSKSDGKDVKPQ
PKGIQHIIPPRPETPKLFLAALSITDKFGIKGTFSLIKQKLRESAKMKPLPKPPASPVHR
RSPVPVEKVEDDDDDDDEVVSKSSDYSVLIRMSPSHRKSKGQILSVEVPTEGEEEDSEK
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggatgtttacctggatagcaaaagttgccccacaactgcctcagccagtgaag
catctggagatcagatctgaggttaagagtagctctcaacctgcagaagaaccagaagaa
gagaaaacagagaactttacagaaaatgcagaccaagtctccttaccaaaaaatgaaaca
gatatatgttctaacccaggagaaacacaagctgaacctgaccaggtgccattgccttgc
acagaaacaagctctggaggtggtgtcctagtctggattgcgcagaatctaagcagattc
attccacaacatcttggtagctccacactgccaagacctgcaccagctgaatctgaaaag
gaaatagagattaaggaagaagaaccaagcacagcttggtaatttttattgatggtgact
gtgataccctcaccagatccagctccagcaccagctccagatccaactccagctccagat
ccaactccatcccaaattccggcacaagctccagctctaattccagaaagtgttccagct
ccggatgaccaaccactaagtcagccatctcctgttgtagaaaacccattggtccaggac
cagcgggatgaaggtcgaagtggtggaatgttcaggtggtttgtagaagggctggaaaag
gtgttaccacaaccagaaggaaaatctaaaccaaccaatctcaatatggcagcagctgag
gcggccattgctccccaggaagaaaaggaggaacctgcaaaaccacagacagaacaatcc
attgctgaaacaatgcctgagcctgcggctaagcctgagcccgagccagagcctgagcct
gagcctgagcctgagcctgagcctgagccaaaagcagaagttgttgtgacacctaaagag
gccactgagcaacagacagaacagacagatactgactgcattgtcaatgtcattgaaatg
cctcactcgtcagctaatggaagcagtatgtttggttggatgactcaaagcctgggaaag
gtgattcctaagcctgtagggagctctgtgcctgtaactaccacagtgaaaatggagcaa
gcaccccaagaaactaaggtcccagtggaggagaaggaatcacaactgaatgtgactgat
gttaaagaggaagtgcccaaagctgtaaccattatagaagttgttccagctgatccaaac
ccagattctagagtgaaggaagagaagcagccagcgggagagccgatcaccaagaccagc
agtgaggaggctaaaagtgtcttcagttggctagcaaaaggtcttgggaatgttgtgcca
cagccagtcatcaaatcccaattaataaaggagaatgacaggactacagctgcatgccat
gcagaggaaattccagtttgtattccaaaggagatggagttggtagacattgaatctgac
tgggatgaagaggttcgataccttgatgctgaaactcaaacaagcgaatgtgaggcattg
gcacagatcacaaaacaaaccacagccacagatgtaacactgataaagcagagtgatgag
acaccagaggaagaagaagaaaggcagctgtggagtatcaccgaggaggaggaggtggac
atggaaattgtgaaagtgtgtgaaggaactaagagctgtgaagatctacccagtgaagag
gcagaggcggtttgcaaaagaaccaacagcagtgaggatcaatcaacagcagaattgatg
cagatttgtgaagaagcaaagactgatgatggtctatcaacagcactatcattgcaggtg
tatgaagcagccaagagcagtgagggtctgtcacgagcagaaagtaagtccaatcaggaa
aatgtggatgaaccatcccatgagtcacctgtgcaagcttggaatagccaaacaaatctc
caggttgatgacagttccagagataaacagggttcaacaacaagtattaccagcgccatt
gttaatgagcgcctccaagagctggtgagaagctttaaagaacgaacagaactagtcaag
gaaaagcttattgaccctgatgcatctgaagatgagggaagtccaactgcatccccaact
aagaaggctatggaagccccccctccacctccacccccaccgcgagaggaagaaaaggag
gaagaggaggaagaacattattgtgaaatgatgtgctgccggtttaaaactcaaccttgg
atcagacggattagaggactggggtttccatccagcgttgaccccttcagcaatccaatg
tatgtgctgtggttatccattgtggtcttcgcctggaattggaatgtttggttaatccct
gttcgttgtacctttccttatcaaacacctgataacgtccacctgtggctgttgatggat
tatttctgtgatctgatctacgtgatagacatcgcttttttccaatcccgtcttcagttc
gttcaaggaggagacattataacagcaagaaagcctatgagagaaaattacatgaaaaca
cctaaattcaggatggacttagtgtcacttttacctctggacattttgtacattaagtta
ggtttcagacctgtattaaggtttccacgcctcatgaagtacatgacctttcttgaattt
aatgaccggctggaggctataatgagcaaggcctatatatatagagtgataaggaccaca
gtatacctactgtacagcctccatataaatgcctgtctatactactgggcatctgactat
gagggcattggagccacaaagtgggtctatgatggggaaggaaacagttacatgaggtgc
tattactgggctgtgaagactctgattacaattggagggctaccggacccacagacagta
tttgaaatattctttcaacttctcaattatttcacaggagtctttatcttctccattatg
attggtcagatgagagatgtggtgggtgcagccactgctggacagacatattatcgaaac
tgcatggataacactgtgaagtatatgaactcttacagaattcctcgattcgtccagaac
agagtacggaagtggtatgaattcacttgggaatcacaaggaatgctagatgagacagag
ctgttggtgcagcttcctgacaagatgagattggacattgctattgatgttaactacagc
attgtcagtaaagtggcactgtttcaggggtgtgacagacagatgatttacgacatgctg
aaacgactgaagtcagtggtgtacctgcctggagactacgtatgcaagaagggagagatt
gggagagaaatgtacatcattaaagctggagaggtccaggttgttggtggtcctgatgga
aagactgtgtttgtgactctacgagcaggttctgtatttggcgagatcagtttgctttcg
gttggaggagggaatcgacggactgcaaatgttgtagctcatggatttgcaaacctcttc
attctcgacaagaaagacttgaatgacattctaacccactatccagactctcagaagctg
ctgcgaaagaaagctaagaaactgctgtctaaaagtgatggaaaagatgtaaagccacaa
ccaaaaggaatacagcatatcatccctccaagaccagagactcccaaattattcttggca
gccctctcgataacagacaaatttggaatcaagggaacattctcacttattaaacagaaa
ctcagagaatctgccaaaatgaagcctcttccaaagcctcctgcctcccctgtccatcgc
cgatcacctgttccagtggaaaaggtggaggatgatgatgatgatgatgatgaggttgtt
tccaaatcttcggattactctgtgctgatcagaatgagcccctcacaccgcaagtctaag
ggacaaatcttatctgtagaagtcccaactgaaggagaggaagaagattctgaaaaatga
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