Rhincodon typus (whale shark): 109910606
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Entry
109910606 CDS
T06055
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109910606 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtp03009
]
109910606 (utp4)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109910606 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EML
Beta-prop_NUP159_NUP214
DUF7165
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_WDR75_1st
Ge1_WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_TEP1_2nd
Lactonase
Motif
Other DBs
NCBI-GeneID:
109910606
NCBI-ProteinID:
XP_020365411
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Position
15:complement(415351..443162)
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AA seq
528 aa
AA seq
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MIVTGSLDVIRVFDVKSGHCTRHIFVDRGDPVSHNRECVVWSLCFLSNYSIVSADSAGKV
QFWDWQTGTLLKTHPVTKCDVLTLSVNKAEDSIVAGTSEGTVVQFQLIAVKSGVADTQWV
RTKTFKHHSHDVRAVIHTKSALVSGGLDAQLVIRPLMDRVETKSYEAALRKILFPHRNLV
CCSRKANLLLFQFPDQLELWRLGSPGGSGIPGDILPISKKPEKLLQLKNKGCDHIRCCAL
SPCGTWIAFSNVYRVRLYRIQYENDSVTIHAASQFLKAQQPAHQLLFSADSTKLFVALDR
SRVQVVDLVMLNSKHAHILTPKSDSLEPVCLLAVSADSNWLAAANSDCEINIYNLKQLKN
HCTVPVYNHLPTAIAINPHTNNLITVHTDHQIFEFSISEKKYTEWSRALQQQGLHQHWLE
RDTPVTHVTFNPKVTTQIILHDTYMFCIIDQLLRLPNEQSNLHNQLTLKRLSGKARKVEE
HAFKICKKFKPLMHVELLFDGCLVVVERPVMEINAQLPAPIRQKKFAT
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgacaggatcgctggatgttatccgagtttttgatgtgaagtctggtcactgc
acacgtcatatttttgtggatcgcggtgatccggtttcgcacaatcgagaatgtgtggta
tggagtctctgttttctcagcaattactctattgtgagtgctgattcagcagggaaagtg
cagttctgggattggcagacaggaactctgctgaaaacacacccagtcactaaatgtgat
gtgttgacactttcagtgaacaaggctgaagacagcattgttgctggaacctctgaggga
actgttgtccaatttcagctgattgcagtaaagtcaggagttgctgatactcagtgggtt
cgtacgaagacttttaaacatcattcccatgatgtgagggctgttattcataccaagtcg
gctcttgtctcgggtggtttggatgcccagcttgtcattcgtcccctgatggaccgtgtg
gaaaccaagtcatacgaagctgctctccgcaaaatcctcttcccacaccgaaacctagtc
tgttgcagccggaaggcgaatctactcctgtttcaattcccagaccagctcgagttgtgg
cgattgggtagcccaggaggttcagggattcctggagatatccttccaattagcaaaaag
ccagagaagttgctgcaattaaagaacaagggttgtgatcacatacggtgctgtgcgctc
tctccttgtggaacctggattgctttctcaaacgtttacagagtccgtctctatcgaata
cagtatgaaaatgacagtgtcacaattcatgcggcttcacagtttttgaaggcacagcag
ccagctcatcagttgctgttctctgccgattccaccaaattgtttgttgccttagatcgt
agtcgtgttcaggttgtggatctggtgatgcttaattccaagcatgcacacatactcact
cccaaatctgattcccttgagcctgtctgcctgttggcagtgagtgctgatagcaactgg
ctggcagctgcaaattctgactgtgaaatcaacatctataacttaaagcagctaaagaat
cactgcacagttccagtctataatcatctccctactgctattgccattaatccacacacc
aacaatctgattactgtccacacagatcaccagatttttgaattcagcatcagtgagaaa
aaatacactgagtggagtcgtgcactgcagcaacagggattgcaccaacactggcttgaa
cgggatacgcctgtcacacatgtgacttttaaccctaaagtgaccacacagattatcctt
catgatacatacatgttctgtattattgaccagttgctgcgtcttccaaacgaacaatca
aaccttcataaccaactgaccctgaaacgtctctctggaaaagcccgcaaagttgaggaa
catgcattcaaaatttgtaagaaattcaagcctctgatgcatgttgaacttctgtttgat
ggttgtcttgtggtggtggaacgtcctgtgatggagatcaatgcacaactgcctgcacct
atccgacagaagaaattcgccacataa
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