Rhincodon typus (whale shark): 109910627
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Entry
109910627 CDS
T06055
Symbol
smarcal1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109910627 (smarcal1)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
109910627 (smarcal1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HARP
SNF2-rel_dom
Helicase_C
ResIII
Flavi_DEAD
TK
Motif
Other DBs
NCBI-GeneID:
109910627
NCBI-ProteinID:
XP_048455337
LinkDB
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Position
7:complement(98714177..98790297)
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AA seq
796 aa
AA seq
DB search
MSVVLTEDQKRQIETNRLKALARRAERLALQQQTLSQQNSAFPSTHQNGLQYTPTHRHLG
LVQQSDSAAEVASPLCTGQQKAAVIDAAPQAYLKMENGDAKFTPFVTQPDSMTKGVPPCT
TKERNMLASNSSEQETWAGANLGHSVSGNADLLSGKSHSSSAGISLGNWSNNYRGSCVKH
SKDRFRVEIGYNAELVSIFETIPSRNFDTATKMWNFSLDDYNHLMERVKLVPRTTLTPLD
GMSEPEMAIATSSLPKTGRKRCSALTVNQLAMLGKNWKKPAAVIQGQFRLLSRSRCEVEI
GYHAEVLKIFKQANSRHYDMKTRKWSFLLEDYKQLIDALSKISAVQIEPFPRGVLEIFLP
QFEKTSLEPLEVPEADLSAVDPKLVHSLMPFQRDGVNFAISRGGRLLLADDMGLGKTLQA
ICIAAVYRKEWPVLVITPSSVRFTWAQAFSQWLPSLDTQAINVILTGKDRLLSSHVSIIS
YDLLAKLKNQLMERSFQVIIVDESHFLKNVKTARCKAARPLLQAAKRLILLSGTPAMSRP
AELYSQIAVLQPKLFPNFHDFGIRYCAAKRLPWGWDYSGSSNLVELRLLLLESLMIRRLK
SDVMTQLPAKRRKMVLVQPEGVSAKARAALEAAAKEMTKDHKTKREKKEALLLFYNRTAE
AKVRSIVEYVKDLLESGREKFLVFGHHRLVLDALCETLEEKKVKFIRIDGSTSSSDRQSL
CDQFQFSEQRCVAVLSITAANMGLTLSSADLVVIAELFWNPGILFQAEDRVHRIGQLNCV
DIHYLVARGTADDYLW
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtggttttgactgaagatcagaaacgacagattgaaacaaatcggttgaaggca
ctggccaggcgagcagagaggttagcgttacagcagcaaacactatctcaacagaactct
gcatttccatccacccaccagaatggactgcagtacaccccaactcaccgtcaccttgga
ctggtacaacagagtgattctgcagcagaggtggcatcacctctatgcactggacaacaa
aaggctgctgttatcgatgctgcgcctcaagcttacctcaagatggagaatggggacgcc
aagttcactccttttgtaacacaacctgactccatgaccaaaggcgttccaccctgtacc
actaaggaaaggaatatgctggcatctaatagttcggagcaggagacttgggctggggca
aacctggggcattccgtttctggtaatgccgacttactatcagggaaaagccattccagt
tcagctggaatctcattgggaaactggagcaataattacaggggcagctgtgtgaagcac
tctaaggatcgatttcgtgtggaaattggatacaatgcagagctagtttcaatcttcgaa
acaatcccaagtaggaattttgatacagccaccaagatgtggaacttcagcctggatgat
tacaaccacttgatggagagagtgaaactggttccaagaaccacgttaacgcctctagat
ggaatgtcagaaccagagatggccattgctaccagttcactgccaaaaactgggagaaag
cgttgttccgcactaactgtaaaccaactggcaatgttgggaaagaactggaagaagccg
gctgctgtgatacagggacaattcagacttctgtcacggtcccgttgtgaagttgagatt
ggttatcatgcagaggttctgaaaatcttcaaacaggccaactccaggcattatgatatg
aaaacgagaaagtggagcttcctgttggaggattacaaacagctgattgatgctctatca
aagatctctgctgtgcaaatagagccattcccgagaggggtgctggagatcttcctgccc
cagtttgaaaagacctctctggagcctcttgaagtcccagaagctgatttgtcagccgtc
gatcccaaactggtccatagcctaatgccattccaaagggatggagtgaattttgccata
tctcggggaggccgtttgctgttggctgatgacatgggacttggaaagacacttcaggcc
atttgcatcgctgcagtttatcgcaaagaatggccagtgctcgtcattactccatcctct
gtccgatttacctgggcacaggcttttagccaatggctgccatcactagatactcaggct
attaatgttatactgacagggaaagatcgattattatcctctcatgtcagcataatcagc
tatgacctgctcgccaaactcaagaatcagttgatggagagaagcttccaggtcatcatt
gtagatgaatctcatttcctgaagaatgtgaagacagcgcgatgtaaagctgctcgcccc
ctcctccaggcagcaaagagactcatccttctctctgggacaccagcgatgtccagacca
gctgagctgtacagtcagatcgctgtgctccagcccaaactgtttccaaacttccacgac
ttcggaatccgttactgcgctgccaaacggttgccctggggatgggattactcaggatca
tccaatctggtggaactgcggctgttgcttctggagtctctcatgatcaggcggctgaaa
tctgatgtaatgacacagctaccagctaagaggcgtaaaatggtgcttgtacagcctgag
ggcgtgagtgcgaaagccagggcagcattggaggcagctgctaaagagatgacaaaagac
cataaaacgaaacgagagaaaaaagaggctttgctgctcttctacaatcgtacagcggag
gccaaagtcagatcaattgtggaatacgtgaaggatctgctggagagtggcagagaaaag
ttcctggtgtttgggcatcaccggctggttctagatgcgttatgtgagactctagaagag
aagaaagttaaatttatccgtattgatggctccacttcctcctccgatcgccagtccctg
tgtgaccagttccagttctctgagcaacgctgtgtagctgtgctgtctatcacagctgcc
aatatgggcttgactttatcctctgctgatctggtcgtcattgctgaacttttctggaac
cctgggatcctgtttcaagctgaagatcgagttcatcgcatagggcagttaaactgtgtg
gatattcattacttggttgctcgaggcactgctgatgattatctctggtga
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