Rhincodon typus (whale shark): 109910713
Help
Entry
109910713 CDS
T06055
Symbol
nup153
Name
(RefSeq) nuclear pore complex protein Nup153 isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
rtp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109910713 (nup153)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109910713 (nup153)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109910713 (nup153)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109910713 (nup153)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nup_retrotrp_bd
Motif
Other DBs
NCBI-GeneID:
109910713
NCBI-ProteinID:
XP_020365538
LinkDB
All DBs
Position
2:complement(118447122..118512489)
Genome browser
AA seq
1453 aa
AA seq
DB search
MAAATGGGGGKIRNKRHHIISKPYAKNQGIIGRVTNTVKNIVPGWLQKYFGKTSKTEPAE
AGGSLNNHENDPVLVNETPPFDNGKHQPAPTTSRTAVSTPSSKSALNFSEMLLLRPALSR
AHINCAALDTPAHDCQPSTSSSFPIGNSGFSLVKEIKDSGSLHEDDNISTTSGFSSRASD
KDVITSRNASLPPLWSPEGERFHSAPQQPAVSLKRPSFNLSAFGSSPPSFISTSLLNSSQ
LGDSPFYPGKTTYGGAAAAAVGRASQPRSTPYQVPIRRQMKAKPASSPSYGVTSATARRI
LQSLEKMSSPLADAKRIPSTVTSPLSMSLEKSTIDATGWQSKMRKLEAQGPPVQKLQTPV
IVSGAINRSMFFKPSLTPGGQSNRHIDRTENQNNRVREKSPIPEISLQATKSDSCSYQVI
GSRATNGLTSGGAGGKMKRDKGHYSSRSAQEVKALAPELPEVSLPVKNTKLPTFNFGSPS
TTLSPVISTVTQSFPDKVVVSSPNNAAFTFSTPNIKATEANLQPISVSTGFTFSEPIDKS
VPFVFVSARPSINAAKCISLPSISTPMNERKGEECDGLLKPAKTLKQGSVLDILKGPEFT
LPSSSTQCVTKSLDITPATVKPLPPTTEKNSSSIESSSTLGFGDKFKPAEGSWQCGSCFV
QNKITDSKCVACQTSKIVLPMQTDNESANRDKPTCKETPVSFADKFRPALGTWSCDICLV
QNKSEAVKCAACDSPKAGTGVKSALTLPAVIESTRNRESNPSSSNSVGLGLADQFKKPEG
VWDCAVCLLENKAEDSKCVACQSAKPGIVPVVANTTASTPTEGILGFGDKFKKPTGSWDC
ETCFVQNSSNITRCVACKTEKTGSKIEPKGLSSSVLSTVASPFSIGIQPSTVDSSQSKDG
ATGFKFGNQGGFKFGTSDSASSTSAFGGLKFEVAGGFKFGLTSTEKISEENKKDNSKGTS
GGFKFEVAAFGNNPTSTKFASDTSQQSKKSDVAPGGFKFDTSGTFKPEDKGTASGFKFGT
EEKKETSVVQFQLDKAEERKDGANVNAVLLEKAVDQEPVAAKAFVFGKPDEKQNSLCSTP
IAFGKRKDVEPQPQSELTFKKPEQTKESASLSDTSKAEPKTGFTFNLVKPVEKPEATETA
QQGFVFGATVNTSEQGITKPAFSLFGNSSSMSTAANAAGSAPPSIFGNSASATNPPFLFG
QASTTAGSANLGSCSESTVAATKPFLFGSQDIKPAVSNSSTGTSVAFPFGSTPSSSTATS
SVFTFGASTTTSSSTGGSSNSIFGFGSSSTAAVNPPAFGNVQTPVPLFGQSSSQPPTAFV
SAGAPTFAFSTGCQQPAFGPQSTSSQPSLFGGQLPNQQPTFGSTSSTSSNAFQFGNSGHS
FNFNATNSSNEVFKFGSASTGATQQPGSTGGFQFNPSPGFAVGVSSTNPFSTTSSGRSTV
TGRKIKTAVRRKK
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgacaggaggaggagggggtaaaatccgaaacaagagacaccatattatc
agcaagccttacgccaagaaccagggaatcatcggaagagtcacaaacacagtgaagaac
atagtacctgggtggctgcagaagtactttgggaagacatctaagacagaaccagctgaa
gcaggagggtcgctaaacaaccatgaaaatgatccagtcctcgtaaatgagaccccacca
tttgataatggaaaacaccaaccagcaccaacaaccagcaggacagcggtaagcacacca
tcaagcaaatctgctttaaatttctcagaaatgcttcttctgcgaccagctctcagtcga
gcacatattaattgtgctgcactagatactcctgcgcatgattgtcaaccgtccacctcc
tcctcttttcctattggcaattcaggattctcactggtaaaggaaatcaaagattctggc
tcactacatgaagatgataacatctccacaacaagtggtttctcttcccgagcttctgat
aaagatgtgataacatcaaggaatgcttctttgccacctttgtggtccccagaaggggaa
cgctttcattctgctccccagcagcctgctgtgagcttgaaaagaccatcttttaatctg
tctgcatttggaagttcacctccatcttttattagtacttctttactaaattcaagccag
cttggggattctcctttctatcctggcaagactacttatggtggggcggcggcagcagca
gtaggaagagcttctcaacctcgaagtacaccgtaccaggttccaataaggagacagatg
aaagcaaaaccggcaagttcaccatcttatggtgtgacgagtgccactgccagacgcatc
cttcaatctttagaaaagatgtcaagtcctttagcggacgctaaaagaattccttcaaca
gtaacctctcccttgtccatgtccttggagaaaagtaccatagatgcgactggttggcag
tccaaaatgagaaagctggaagcacagggtcctcctgtacagaaacttcaaacacctgtg
attgtttctggagcaattaatagatccatgtttttcaagccatctctgacccctggaggg
cagagtaacaggcacattgacaggacagaaaatcaaaacaatcgagtgagggagaaatca
cctatacctgaaattagccttcaagcaacaaaaagtgatagctgttcatatcaagtaatt
ggctctcgtgcaaccaatggtcttacatctggaggagctggaggaaaaatgaagagagat
aaaggacattactcatctagaagcgcacaggaggtaaaggccctagccccagaactgcct
gaagtatctttaccagttaaaaatacaaaattgcctaccttcaactttggctccccttcc
acaactctatcacctgtaatatctactgtaacacaatcttttcctgacaaggtagtggta
tccagtccaaacaatgctgcctttaccttttccacaccaaatataaaagcaactgaggca
aatctgcaacctatttcagtgtccactggatttacatttagtgagccaattgacaaatca
gttccatttgtctttgtatctgccagaccttccattaatgcagcaaaatgcatctcattg
ccttctatttctacaccaatgaatgagagaaaaggtgaagaatgtgatggactattgaaa
cctgctaaaactctgaagcaaggcagtgtcttagacattttaaaagggcctgagttcact
ttgccttcttcatccacacaatgtgttaccaagtccttggacattacaccagctactgtg
aagcctttaccaccaactactgaaaaaaatagttcctccattgagagctcaagcacctta
ggatttggagataagttcaaacctgctgaaggttcctggcagtgtggctcctgctttgta
caaaacaaaatcacagacagtaaatgtgttgcttgtcagacttccaaaattgtacttccc
atgcagactgataatgagtcagccaacagagacaaacctacatgtaaagagactccagtg
agttttgcagacaaatttagacctgcattgggcacatggagctgtgatatctgtttggtt
caaaacaaatcagaagctgtaaagtgtgcagcttgtgattcgccaaaagctggaactgga
gtgaaatctgcactgactttgcctgcggtgattgaaagtacaaggaacagagagtcaaac
ccttcaagcagtaactctgtgggtttgggattggcagatcagtttaagaaacctgaaggt
gtgtgggactgtgctgtgtgcctcttagaaaataaagctgaagatagcaagtgtgtggct
tgccagtctgctaagccaggtattgtacctgttgtagccaacaccactgcttcaacaccg
acagaaggaattctaggatttggtgacaaattcaagaagccaacagggtcctgggattgt
gaaacatgtttcgttcagaactcatcaaacataacaagatgtgttgcttgtaaaactgag
aaaacaggcagcaagattgaacctaaagggctcagctcttctgtattatcgactgttgct
tctccattcagcattggaatccagccctcaacagtagactcttcgcaaagtaaagatggt
gctactggttttaaatttggaaatcagggtggttttaaatttggaacgtcagattctgct
tcctcaaccagtgcctttggaggacttaaatttgaagttgcagggggtttcaaatttgga
cttacttcaacagaaaaaatttcagaggaaaacaagaaggataattctaaaggtactagt
ggtggatttaaattcgaggtagctgcctttggtaacaatccaacttcaactaagtttgcc
tctgatacaagtcaacaaagtaagaaaagtgacgtggcacctgggggttttaaatttgat
acgagtggaacatttaaacctgaggataagggcactgcgagtggctttaaattcggcaca
gaggagaaaaaagaaacttcggtagtgcagtttcagctggacaaagcagaagaaagaaaa
gatggtgcaaatgtaaatgcagttctgcttgaaaaagcagtagatcaggagcctgtggca
gcaaaagcttttgtgtttggcaaaccagatgagaaacagaactctttgtgctctacacca
attgcatttggtaaaaggaaagatgttgaaccgcaaccacagtctgaacttacttttaaa
aagccagagcaaaccaaagaatcagcatctttgtctgacacttcaaaagcagaacctaag
actgggtttactttcaacttagttaaacccgttgaaaaaccagaggcaacagaaactgca
cagcaaggatttgtgtttggggctacagtaaatacttcagaacaaggaattacaaaacca
gctttcagcttatttggcaacagttcttccatgtccactgcagcaaatgctgcgggttct
gcacccccctccatctttggtaattctgcatctgctacaaacccaccatttttatttgga
caggcgagcaccactgcaggaagtgcaaatcttggaagctgttctgagtcaacagttgct
gcaaccaagccatttttatttggctcacaggatattaaaccagctgtcagtaattcaagt
acagggacttctgtagcattcccatttggctcaacacccagtagtagcactgctacatca
tctgtgtttacattcggtgcttcaaccacaacatcaagttcaacaggtggttcctcaaac
tctatctttgggtttggatcaagttctacagctgcagtaaatcctccagcttttggtaat
gtacagacccctgttcctctctttggacaaagcagcagtcagccacctactgcctttgtt
tcggctggtgcacctacctttgcattctcaacaggttgtcagcaacctgcctttggtcca
cagtctaccagtagccaaccatctctctttggaggacagttacccaaccaacaacccaca
tttggttcaacttcatctacctcgagtaatgctttccagtttggaaacagtggtcatagt
tttaacttcaatgccaccaattcatcaaatgaggtttttaaatttggatctgcttctacg
ggagcaacacaacagcctggatccactggtggctttcagttcaatccatcccctggattc
gctgttggggttagcagcaccaatcctttttctacgacgtctagtggccgttcaactgtt
actggtcggaagataaagactgcagttagacgcaagaagtag
DBGET
integrated database retrieval system
