Rhincodon typus (whale shark): 109911008
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Entry
109911008 CDS
T06055
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109911008 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtp01009
]
109911008 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109911008 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109911008 (rb1cc1)
Protein phosphatases and associated proteins [BR:
rtp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109911008 (rb1cc1)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
ULK complex
109911008 (rb1cc1)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
109911008 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG17_like
ATG11
ubiquitin
TBK1_ULD
Pneumo_M2
DUF6471
Motif
Other DBs
NCBI-GeneID:
109911008
NCBI-ProteinID:
XP_048452076
LinkDB
All DBs
Position
4:64012208..64193655
Genome browser
AA seq
1590 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELAVQTVADLKHAIQAKYKIATQHQVLVVNGGECMVADRRVC
SYSAGTDTNPIFLYNKEMILCDRAPTIPKTTFSAENEMGLKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCERLVHDEHLQHQGWAAIMANLEDCTHSFQKLLAKFENAYSNYEH
SVEDIKQKLTNLGTAVSVMAKIPLLECLTRHSYRECQERLKLPTQNGSTEEETEDVKSTS
SAVCSAKPTVSRNSPSSSTSFGCSAQNSVIQQEGKYTETIEDRTLKTVAEDEFKVDDQAF
FNVSLLDWVNVQDRPNDVESLVRKCFDSMNRLDPEILQPFLAECHETIAKLDNQNMKAIK
GLEDRLYALDQMIASCNRLVNEQKELAQGFLANQQRAENLKDPSVLPDLCLSHANQLMIM
LTNHKKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQNGEKLQALLRLLTELQERI
RIVEALSTVPQMYCLAVVEVVRRKMFTKHYREWASALVKEGKQFYEAERVKRESFGKLFR
RSFLRNRLFKGLDSWPPSSFCTYKPRKFDFELPDVSLTDLQFLQSCCPSEVQPFLRIPTL
CDFEPLHQHLQILCNLVKAAQSWDEMSQTITDLLTEQKVSLDQPSITTPTKHRLESTTRT
KTTSSRSTSTLSLQGPVCPPANVPASLEELSPDSIDAHTFDFETIPHPNLEQVLKQGSID
MDSLAESPESDFVSAVNEFMIEESSTSPNLNSDPQSPEMMLESLYSSVINAIDNRRMQDT
TFGENEDSKEVATLKVHLEKYRLITEMSQLHFINIKKDLNRFRELVQKEQCDISSSMKNV
SEELRNIIETVKCRVEVGAKENYQQKLEILRKDYEDQMDKLNVELVTAQQNVDRLKKDLL
ELENYIKQKDREFAEARTENETLLCLQISKDKEIHDLVEDRKKKETEIQELKQLKESLLE
ELNRLNIKAEHEMKCLREELQTLEQSHLKDLEDNLKVRHQQELKKLMTDHSNLQEQISKE
NEARLDRVQQSLTMMLQDREQELNEHKLKVSELSDFRCSLEAELALKEVETEELKQRLKE
IQVQQEEIAKCQVMKETETEKYREEITDLKHQLQLKNEEYKVGLAEERILMTTEKDQCIS
DLLDRQEQEKALLKAELDKLDVMRQQALDVEVALRGQVEELTTKLKEYLKTIETEREEMV
SEKQRIAFEVEAKYKATIHDLEEEKQQLLNTLSQEREEFVRNKMHEDHECKRQALEQELQ
INQQVESQLEDQSRAESKDPLSSASMKWTPPPSTIADLTGKFQEEKANLLDQLEKRNEEL
QSLKTSLIAEQQTNFNTVLTREKMKREQIINDLNDKLRKLTQQQEKDRVLIETLSADRAT
LLQEKKQLDEELNRLRSNVLVCSVFSSPGNSGAEASVSGPEIPFDSERFAPVAAVAEEGR
IESAMEASTMTVRETIQMSEEKHRIMILERTLQMKEEENKRLNQRLMSQSMSSVSSRHSD
KIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLGALDLKPGIPFWDTIGGIA
PLRNITAAARPVASQVALLQSRIGQSPSKQ
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtatttctggttaacactggaactacccttacatttgacacagaactt
gctgtacaaactgttgcagatcttaagcatgccatccaagctaaatataagatcgcgact
cagcaccaagtgttggttgtcaatggaggagagtgcatggttgctgacagacgtgtttgt
agctacagtgctgggacggatacaaatcccatatttctttataacaaagagatgattctg
tgtgaccgtgcaccaactatacctaagacaacattttctgcagaaaatgagatggggcta
aaggtagaggagtcccttatgatgccagctgtatttcacacagtagcctcgagaactcaa
cttgctgtggagatgtatgaagtagcaaagaagctttgttcattctgtgaaagattggtc
catgatgaacatcttcagcatcaaggttgggctgccattatggccaatttggaggactgc
acccattcttttcaaaagctgttggcaaagtttgaaaacgcatacagcaattatgaacat
tctgtggaagatattaagcaaaagcttacaaacctaggtactgcagtctctgtaatggcc
aagataccactattggagtgcctaaccaggcacagttacagagaatgtcaggaaagactg
aaattaccaacacagaatggaagcacagaagaagaaactgaggatgtgaagtctaccagt
tcagcagtttgttctgctaaacctacagttagcagaaattcgccttctagttctacatct
ttcggatgttctgcacagaatagtgttatccaacaggaaggaaaatacactgagaccatt
gaggacagaacactgaaaacagtagcagaagatgaattcaaagtagatgaccaagctttt
ttcaatgtttccttattggattgggttaatgtacaagatagaccaaatgatgtggaatca
ctggtcaggaaatgctttgattcaatgaaccgacttgatccagaaattcttcagccattt
ttggcagagtgtcatgaaacaattgccaaacttgataatcagaatatgaaggcaattaag
ggacttgaggacagactatatgccctggatcaaatgatagccagctgtaacagactggtg
aatgaacaaaaagaattagctcagggatttttagcaaatcagcagagggctgaaaacctg
aaagacccatctgttcttcctgatttatgtctgagtcatgcaaatcagttaatgattatg
ttaacaaaccacaagaaactgctggatattaaacagaaatgcaccactgctaagcaggaa
cttgcaaataacttacaagtcagattgaagtggtgctgttatgtgatgcttcatgcggat
cagaatggtgaaaaactccaggctttgctaaggcttctgacagaactgcaggagagaata
cgaattgttgaggcgcttagcactgttcctcaaatgtactgccttgctgttgttgaggta
gtaaggcggaaaatgttcactaaacattatagagagtgggccagtgctctcgtaaaagaa
ggaaaacaattctatgaagcagagagggtgaaaagggaatcctttggcaaactgttccga
agatcgtttcttagaaatcgcttgtttaaggggctcgactcatggccaccatcgtccttt
tgtacgtataagccccgaaagtttgactttgagcttcctgatgtatccttaactgactta
caatttctgcagtcttgctgcccttcagaagttcagcctttcctcaggattcctacactg
tgtgactttgaaccattgcaccagcatcttcaaatcctgtgtaatttagtcaaagctgct
cagagttgggatgaaatgtcccaaaccatcacagacttgttgactgagcaaaaggtgtcc
ctggatcaaccttcgataacgacaccaacaaaacacaggttggaaagcacaaccagaact
aaaactacctcttcgagatccacatctacacttagccttcagggaccagtctgtccacct
gccaatgttcctgcctcgttagaagagctgtctcctgatagtattgatgcccatacattt
gattttgaaaccattcctcatccaaatttagaacaagttctcaaacaaggatctatagat
atggactcattggcagaaagtccagagtctgattttgtgtctgctgtaaatgaatttatg
attgaggagagctcaacttcacccaacttgaacagtgacccacaaagtcctgaaatgatg
cttgagtcattatattcttcagttattaatgccattgataatagacgaatgcaagataca
acttttggtgaaaatgaggattctaaagaagttgcaactcttaaagtgcatttagaaaaa
tacaggcttatcactgaaatgtctcagttacattttataaacattaaaaaagatcttaat
cgtttcagagaacttgttcagaaagaacagtgtgatattagtagttctatgaaaaatgta
agtgaagaattaagaaacataattgaaactgtaaaatgtagagttgaagtgggagcaaag
gaaaattaccaacaaaaattagagattttaagaaaggattatgaagatcaaatggacaaa
ttgaatgttgaattagtgactgctcagcaaaatgtagatcggctgaaaaaggatttgttg
gaacttgaaaactacataaaacagaaggaccgtgagtttgctgaggcaagaactgaaaat
gaaactctcttgtgtttacaaatcagtaaagataaagaaatacatgacttggtggaagat
agaaaaaagaaggaaaccgaaatccaagaactcaaacaattgaaagagagtttgttagaa
gaattaaacagacttaatataaaagctgaacatgaaatgaagtgcttaagggaagagctt
caaactctcgaacaaagtcatctgaaggaccttgaagataacctgaaagtcaggcatcag
caagaattgaaaaagttaatgactgatcatagtaatctgcaagaacaaatctcaaaggaa
aatgaagcaaggttagatcgcgtgcagcagtctcttacaatgatgcttcaggaccgagaa
caagaactgaatgaacataaattgaaagtatctgaactttctgactttaggtgcagtttg
gaagctgaattggctttgaaggaagtggaaaccgaggaattaaaacagcgcttgaaagag
attcaagtccaacaagaagagattgcaaaatgtcaagttatgaaagaaactgaaactgag
aaatatagggaagagataactgacttgaaacaccaacttcagctaaagaatgaggaatac
aaggtaggccttgcagaagaaagaatactaatgaccacagagaaagatcagtgtatttct
gatctgttagacaggcaagaacaggagaaggccttacttaaagcagaactagataaattg
gatgtaatgagacagcaagcacttgatgtggaggtagcattaagaggacaagttgaagag
ctcaccactaaactgaaagaatatttgaaaacaatagaaactgaaagggaggaaatggtg
tctgagaagcagagaattgcctttgaagttgaagcaaaatataaagcgactattcatgat
cttgaagaggagaagcaacagctgctcaacacattaagccaggaaagggaggaatttgtt
agaaataaaatgcatgaagatcatgaatgcaaaagacaagcacttgagcaagaattgcaa
ataaatcaacaggttgaaagtcaacttgaagatcaaagtagagctgagagcaaagatcca
ctttcatctgcatcaatgaaatggacccctccaccaagtactattgctgaccttacagga
aagtttcaagaagagaaggccaacttactagaccaactagaaaaaaggaatgaagagctt
cagagccttaaaacatcactgatagctgaacaacagactaacttcaataccgtcctaact
cgagaaaaaatgaagagagaacaaattatcaatgacttgaatgacaaactgagaaagcta
acccagcaacaagaaaaggatagagttttgatagaaacgctttctgcagatagagctact
ttactacaagaaaagaaacagcttgacgaagagcttaacagactacgaagcaatgtgctg
gtttgttctgtcttttcatcacctggaaattctggagctgaggcttcggtttctgggcct
gaaattccatttgattcagaaagatttgcgcctgttgctgcagtagcagaagaaggaagg
atagaatctgcaatggaagcaagcactatgactgtacgtgaaaccatccagatgtctgag
gaaaaacataggattatgatcttagaaagaacattacaaatgaaagaagaggagaataaa
cgtttaaatcaaagattgatgtctcagagcatgtcttctgtatcttccagacattctgac
aaaatagctattcgagatttccaagttggggatttagtacttattatcttggatgaacgt
catgataactacgttctatttacagttggcccaacactctatttcctacattcagagtca
ctaggagcactggatcttaagccaggtataccattttgggatactattgggggcatagcc
cctctgaggaatatcacagcggcagccaggcctgtggcatcacaagtggctctactgcag
agcaggatcgggcaaagtccaagcaagcaatag
DBGET
integrated database retrieval system
