Rhincodon typus (whale shark): 109911099
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Entry
109911099 CDS
T06055
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109911099 (taf1c)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
109911099 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
109911099
NCBI-ProteinID:
XP_048452834
LinkDB
All DBs
Position
1:48216010..48256414
Genome browser
AA seq
980 aa
AA seq
DB search
MESAFPYSLYPSFYNSGPSARNPWEPGGWGEYGHVQPFCAEGGDQQETELKWSALKSLKR
ESWETLEPIAVPLLPAKTVFKFRPASLEDLTYTGRLVTTGGGDEMAIGALNFTEQMANFF
LDHRNDAFNSVGRLLEENFYFGESALRGKARQTAISVSHLRTFTEQVKQKECPLSSGSKQ
ARLLNSLLQECVFDIPPNVLAENIHEEMKMQRNKLLFDQSATGGALVYCPFSKEASLEEG
CLIYPGSESMSLLNFRKIALGLDERKMPKLNMKFKPVKFKLNSRIHQINSSTVEEEVFVG
VRSDYHCGAWKLSQDVNPSILQVVQVDNIATCINVSPHVPGELVIASECGTAYLWILDKG
LRKIRKETDNLYFNAQLPWRWCDFTAHPRVYMYADRTGLDLTDSGEACDQTLFKIGATAD
CQKGERVILPKHLQDINPYHYLITTQYSAYIVDERFPTVPVLKWSHMLKSPPMFAQVACG
AAKKRANKIVLATQRTQEVLLLQYSGGTQLPCKSLGPPLKLSSIYDMIQHLPVKLPRQHE
AVVERLHSPGAGLATLYHCCGKKSLSVIQLTAVGDLFYQMLIHKNSSASRKTTARARVGY
DHEPNNSILTERVQSSNHSTEGRDEGAEDLTQGETERPEGNSSRSGVDEQSFQCTNQLLK
PSCTALAKCSRWVNSFLKKQKKFQSASNTLHKRTGISSKCLFPCKTFKKSEESTDTCREL
WDKMSAVMEKQQVLCHSTFPILDPVSVPDVVDASVWRDELSERLTAAWEGKWSQWWEEKL
GVNRDKKIQALRAKRRREKLARTRQRTELSGSFTSSVSGLSDFSDFSNWSTFSGINSEHS
DYLSGTESNVTSSKSAEVNQSVRTVAEKPQKEMEAESSVAVVEQSQASIPTFSQEIQLAS
IPKERKRILQNYLAALEDHSFQASQEADELNMSLPLTSSTQMSFPEPSQVASTYEMSWRS
TSQSQLGSSQPKKKRARMGF
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggagagcgctttcccctattctctttatcccagcttctacaactccggcccctccgct
aggaacccgtgggagccaggaggctggggagagtatggacatgtccagccgttctgtgcg
gagggcggagaccaacaggaaacagaattaaaatggtcagccctgaaaagtctgaagcga
gagagttgggagacattggaacccattgcagttccactacttccagccaaaacagtcttc
aagtttcggccagcaagtctggaagatctaacttacactgggaggctagtgacaactgga
ggaggggatgaaatggcaataggtgcccttaatttcacagaacagatggctaacttcttt
cttgatcaccgtaatgatgccttcaattcggtgggcagacttctagaggagaacttttat
tttggagaatctgccctcaggggaaaagccagacagactgcaataagtgtaagccatctg
agaacattcacagagcaagtaaagcaaaaagagtgcccactttctagtggaagtaagcaa
gcaagacttttaaactcgttattgcaggagtgtgtttttgatattccaccaaatgtgttg
gcagaaaacattcatgaagaaatgaagatgcagagaaacaaacttctatttgatcaatct
gccactggaggtgctctggtatactgtcctttctccaaagaagccagtttagaagaaggg
tgcctgatctatcctggcagcgaatccatgagtttactgaactttcgcaaaatcgcattg
ggtcttgatgaacgtaaaatgcccaaattgaatatgaaatttaaaccagtgaagtttaaa
ttaaatagtagaatccatcaaataaattccagtacagttgaagaagaagtttttgtaggg
gttcggtctgactatcattgtggagcatggaaactctcccaagatgtgaatccatctatc
ctccaggtagttcaggtggacaatattgctacttgcattaacgtcagccctcatgtccct
ggagagctggtgattgccagtgagtgtggaaccgcgtacctctggattttagacaaaggc
cttcgtaaaattcgaaaggaaacggataacctctattttaatgcccagttgccttggaga
tggtgtgacttcacagctcacccacgagtctatatgtatgcggacagaactgggcttgat
ttaaccgattctggtgaggcctgtgaccaaaccttgtttaagataggagcgactgctgac
tgtcaaaaaggtgaacgtgtaattcttcctaaacatctacaagatataaatccataccat
tatcttattaccacccagtattctgcctacattgtagatgaacgatttccaactgtacct
gtcctaaaatggtctcacatgctgaagtcaccaccaatgtttgcacaagttgcatgtggg
gcagctaaaaaaagagcaaacaagattgtcctggcgactcagcgtactcaggaagtgtta
cttctgcagtattcaggtgggacacagcttccttgcaagtcacttggtccaccactgaag
ctttccagtatttacgacatgatacaacacttaccagtcaagttacctcggcaacatgaa
gcagttgttgagagacttcactcccctggagcaggacttgcaacactttaccattgttgt
ggcaaaaagtctctgtcggtgattcagctcactgcagtgggagacctgttttaccagatg
ctaattcataagaattcatcagctagtagaaaaaccacagcaagagcaagggttggatat
gatcatgaaccaaataactcaatattgactgaacgggtacaatcttcaaatcattctaca
gaaggtagggatgaaggagcagaagatttgacacaaggcgaaactgaaagaccagaagga
aattcttcacgaagtggagtggatgaacaaagtttccaatgtactaatcaacttttaaaa
cccagttgcactgctcttgccaagtgttcaagatgggtaaactcatttttaaagaagcaa
aaaaagtttcaaagtgcctccaataccctccacaaacgtactggtatcagttcaaaatgt
ctgtttccctgtaaaacatttaagaaaagtgaagaatcaactgacacatgcagggaactg
tgggataaaatgagtgcagttatggagaagcagcaagttctttgtcacagtacatttcca
atactggatcctgttagtgtcccagatgttgtggatgcctcagtttggagagatgaactt
agtgaaaggcttacagctgcgtgggaaggaaagtggagtcagtggtgggaagagaagcta
ggtgtgaaccgggacaagaaaatccaagcactgcgtgcaaaaagacgacgtgaaaaatta
gcccgaacaagacagcggacagagctgtcaggcagtttcacttcctcagtgtctggtttg
tctgacttcagtgatttttcaaattggagtacgttctctggaataaactcagagcacagt
gattatttgtctggtacagaaagtaatgttacatccagtaaatcagctgaggtaaaccaa
tcagttaggacagttgctgaaaagcctcagaaagaaatggaagctgagtccagtgtggct
gtggtggaacaaagccaggcatcaataccaactttttcacaagaaatacagttagccagt
attcccaaggaacggaaaagaattcttcagaattacttagctgccctggaagaccattca
ttccaagcttctcaagaggctgatgaactaaatatgtcattaccattaacttcatccact
cagatgtcttttcctgagccatcacaagttgcatctacttatgaaatgtcctggcgatca
acctctcagagtcaacttggatcatctcagccaaaaaagaaaagagccaggatgggattt
taa
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