Rhincodon typus (whale shark): 109911144
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Entry
109911144 CDS
T06055
Name
(RefSeq) laminin subunit gamma-1-like
KO
K05635
laminin, gamma 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04510
Focal adhesion
rtp04512
ECM-receptor interaction
rtp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109911144
04518 Integrin signaling
109911144
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109911144
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GFIT
Motif
Pfam:
EGF_laminin
Laminin_B
EGF_LMN_ATRN
MCPsignal
JAG1-like_EGF2
Alanine_zipper
Motif
Other DBs
NCBI-GeneID:
109911144
NCBI-ProteinID:
XP_020365999
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All DBs
Position
10:26217991..26283914
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AA seq
1190 aa
AA seq
DB search
MNTFFSRALVGYSFIIIASSVSGTYVWNGNRYVECNCNRRAYRCEWDPILYQQTGSGTRC
LNCVGNTEGVHCEKCKENHYPLRTGGQCQPCRCNPLGSTGSSCDEYGRCRCKPEGVIGDK
CDKCQPGFYSLSSTGCKRCTCNMAGVTEICDVETGRCTCKYNVEGTNCNRCKSGYYNLHP
DNPMGCSACFCFGHSSVCKVEDGYRKACITSTFDTDYEGWKAQHRRSGDLPLMRSSSSRD
IIVEAKDEYPIFFVAPAKFLGNQVLSYGQNLSFTFYVESNSAYPSVEDLILEGDGQTLTT
QVNAQNNPIPCTKKQTYNYRLHEGLEYGWKPFLTSFDFQRVLSNLKAIKIRGSYNRQSAG
HIDNVSLQTARPGAGSPAQWVEKCTCPTGYEGRFCEKCARGFTRQRRKLGSFSKCVPCAC
QGSSGTCDPETGSCFSNDPPRNCPHGYYPDSTEPRGCRICPCPRGAGCTVTPGTTEVVCV
GCPAKTMGNRCEMCEEGYFGNPQAGRSCQPCQCNNNVDSNSVSNCDRWTGECRGCLYNTA
GHHCERCKDGFYGNALASNPAEKCKPCNCDPSSSWSLQCRDDGTCDCKSGVFGAKCNQCA
GDTYYNSTTGCQECPSCYQAVKSKVMKHKNVVRDLEILISKVKTNGNPSNDKDFDERLRK
ASVVLNRMMTDAEKTEMDDENNLDQLKNLNKKLGVETSRLNNIGKSVDETRRLTVLYEDR
IRNTEKLLSNVRIKIQESRTELNRMPSLPTGPVGGHNLVGLADEARRLADKHVREADDIE
QFSKTANQSAFEALELITQVIKDDQKTMESINLLNQQSKQISDLADELDEQANRITAKAQ
KVSERAQRIYNELNNLPTIDIDVLEAEANELQLKESAIGLELNGKLELYERLKNNVMDFQ
RDVRKILDNGEIEQRAADLLHARANAAKYLAEDAVKKGTSALEQFDRILANLRDFNTRVI
SNKTAAENALNKIPDIIKTIDGANAKTNQAENQLGNAGTTANEAKRKASEANVIAADVLK
RAMKSLDDTDKTLTDVGLLDGDVQDVFEQLGRVQTDMENKQRSVHGDTAMAEMITANVND
ATMNVASTQGSIKKTMDLISNLLLSMGNAAEIDATKLQRIENSLQISKDQLTNELQLKQQ
ELQEAAREQRESIAAYDQDIEDIRGAIKNLENIRDTLPLGCFNTAAYERP
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgtttttctcaagagcactggttggttacagctttattattattgcatcctca
gtgtctggcacctacgtttggaatggtaacagatatgtagaatgcaactgtaatcgcagg
gcttatcgttgtgagtgggatcctatactataccaacaaactggaagtggtacacgctgc
ttgaactgtgtcggcaatacggagggagtacactgtgagaaatgtaaggaaaatcactac
cctctgagaacaggaggacagtgtcagccttgcagatgcaaccctctaggttcaactggt
agtagttgtgatgagtatggtcgatgtaggtgtaaacctgaaggtgtaattggagacaaa
tgtgataaatgccagcctggcttttattcattatccagcactggttgcaaacgatgtaca
tgtaatatggctggtgttactgagatctgtgatgttgaaacaggaagatgcacttgtaaa
tataatgtggaagggacaaattgtaaccggtgcaagtcaggttattacaacctccatcca
gataaccccatggggtgctcagcatgtttctgctttgggcattcgtcagtctgcaaggtg
gaagatggttacaggaaggcttgcatcacctctacctttgatacagattatgaaggatgg
aaagcacagcaccggaggagcggcgatcttccattgatgaggtcatcatcatcacgtgac
attattgttgaagccaaagatgaatacccaatattctttgttgctccagccaagttcctg
ggaaatcaagtgctgagctacggacagaacctttccttcacattctatgtggaaagcaat
agtgcctacccatcagtagaagatctcatcctggaaggagatggtcagacactgactact
caagtgaatgcacaaaataatccaatcccatgtacgaaaaagcagacatacaactacaga
ctccatgaaggtttggagtatggatggaaaccatttttaacttcctttgacttccagcgg
gtgctcagcaacctcaaggccatcaaaatccgtggttcatataacaggcaaagtgctgga
cacatcgataacgtgtctctccagacagcccgacctggtgctggaagtcctgctcagtgg
gtggagaaatgtacatgtccaacagggtatgagggacgattctgtgagaaatgtgcaaga
ggcttcacaaggcaaagacgcaaacttggaagttttagcaagtgtgtgccatgtgcctgt
caaggctctagtggcacctgtgacccagaaactggttcctgcttctccaatgaccctccc
aggaattgcccacatggttattatcctgattctactgaaccaagaggctgtaggatttgt
ccttgtccaagaggtgcagggtgcactgtgacaccgggaacaacagaggtggtgtgtgtg
ggctgtccagcaaaaacaatgggtaaccggtgtgaaatgtgtgaggagggatactttggt
aacccacaggcaggtagatcctgtcaaccttgtcaatgtaacaacaatgtggattccaat
tcagttagtaattgtgatcggtggactggggaatgtcgaggatgtctgtacaacactgca
ggacatcactgtgagagatgcaaagatggcttttatggaaatgcacttgcctccaatcct
gctgaaaagtgcaaaccttgtaactgtgacccaagcagttcttggtccttacagtgcagg
gatgatggaacatgtgattgcaagtcaggagtctttggagctaagtgtaaccagtgtgca
ggggatacctattacaatagcaccacaggctgccaggagtgcccaagctgctatcaagca
gtaaaaagcaaggtaatgaaacacaagaatgtggttagagatctggaaatactaatttca
aaagtgaagacaaatgggaacccatcaaatgacaaggactttgatgaaagattgaggaaa
gcatcagtggtcctcaacagaatgatgactgatgctgaaaaaacagaaatggatgacgaa
aacaatcttgaccaattgaaaaatctgaacaagaagttgggtgttgagacaagtcgcctg
aacaatatagggaaatctgttgatgagactcggaggttgacagtattgtatgaagatcgc
attcggaatacagagaagttgctcagcaacgtcaggataaagatccaggaaagcaggaca
gaactgaaccgaatgccgtctttacctacgggtcctgttggaggccacaacctggtgggt
ctagcagatgaggcacgaagactagcagataagcatgtaagagaggcagatgacatagaa
cagttcagcaaaactgccaaccagtcagcgtttgaagcccttgaattaattacccaagta
atcaaagatgatcagaaaaccatggagtccatcaacctgctaaatcagcagtctaaacaa
atcagtgacctggcagatgaactagatgaacaagcaaacagaataaccgcaaaagcgcag
aaagttagtgagagggctcagcggatttacaatgaactgaacaacctccctacaattgat
atagatgtccttgaggctgaagcaaatgaactccaactcaaagaaagtgccatcggtctt
gagctgaatggaaaacttgaattgtacgaaagattgaagaataatgtgatggacttccag
agagacgtcaggaaaattttagacaatggagaaatagagcaaagggctgctgacttgtta
catgccagagcgaatgctgctaaatacctggctgaagatgctgttaaaaagggcacatcc
gcattggagcaatttgatcgtatcttagctaacttaagagattttaacacaagagtgatc
agcaataaaacagctgctgaaaatgctttgaataaaatacctgatatcatcaagaccatt
gatggtgccaatgcgaaaactaaccaggctgagaatcaactgggaaatgcaggaacaact
gccaatgaggcaaagaggaaagcaagcgaagcaaatgttattgctgctgatgttctgaag
agggctatgaaatctttagatgacacagataagacactaactgatgttggactactggat
ggagatgtgcaagatgtgtttgagcagctaggacgtgtgcagacagacatggagaacaaa
cagagatcagtgcatggagataccgcgatggcagagatgatcacagccaatgtaaacgat
gcgaccatgaatgtagcaagtacacagggttccattaaaaaaacaatggatttgataagc
aacctactgctttctatgggtaatgcagctgagattgatgctactaagttacaacgtata
gaaaattctttgcaaatctctaaagaccaattgaccaatgaacttcaattgaagcaacaa
gaattgcaggaagctgccagagaacaaagagaatcaatagcagcttatgatcaagatatt
gaggacatccgtggagctattaaaaacctagaaaacattagagacactttacctcttgga
tgcttcaacactgcagcctatgaaaggccctaa
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