Rhincodon typus (whale shark): 109911150
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Entry
109911150 CDS
T06055
Symbol
cntn1b
Name
(RefSeq) contactin 1b
KO
K06759
contactin 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04514
Cell adhesion molecule (CAM) interaction
rtp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
109911150 (cntn1b)
04517 IgSF CAM signaling
109911150 (cntn1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtp04515
]
109911150 (cntn1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rtp00537
]
109911150 (cntn1b)
Cell adhesion molecules [BR:
rtp04515
]
Immunoglobulin superfamily
Contactins
109911150 (cntn1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rtp00537
]
Others
109911150 (cntn1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
FN3_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
Ig_5
VEGFR1-3_N_Ig-like
Ig_4
Pur_ac_phosph_N
Ig_SEMA-3_4_7A
Sp38
Ig_C17orf99
Ig_MYOM1
V-set_CD47
Fn3_ROS1
Zwei_Ig_N
C2-set_2
Fn3_VIN3
Ig_Rha78A_N
Interfer-bind
NDNF
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
109911150
NCBI-ProteinID:
XP_048463504
LinkDB
All DBs
Position
18:7791535..8477081
Genome browser
AA seq
1015 aa
AA seq
DB search
MRMWFLLSHFFALSFICCLAEDSRQHGPVFEEQPLPTIYPKESEEAKVSLNCRVRANPPP
VYRWKLNNRDINVDDTRYNMIGGNLVINNPEDVKDRGKYQCLATNKYGTIVSKEANLQFG
YLERFPTEERQAVEVNLGVGVMLLCAAPPHFPDDLTYRWLLNEFPRFIMSDKRRFVSQTT
GNLYIAKVEESDMGNFSCIVTSPSISKSVFSKYIPLIPQTVGVVKRYPADIKVRFTDTQV
LMGQNLTLECFALGNPIPQIRWWKQEGSLPSSAELLIYNSVLRLTNIQPEDEGTYVCEAE
NSKATDRVEGRLTVHAHPFWIRSINDTMQDIGSDFTWQCEAGGKPQPTYKWLHNGEVVYG
ARFRVARGELRISRLTLQDSGMYQCVTENKYGSLYSNAELKVLVLAPDFRLNPVKRKLLG
ARGGKVLMDCKPRAAPKPTFTWSKGTELIKNNSRMSIWFNGTLEIRDLSEADEGVYTCFA
ENNRGKANSSGTLVVTEPTKITLEPSNIDITVGENGTMECHASHDPMLDLSLVWSTNGYT
IDFEKEKDYMERRIENRQSGELFFKNAQLRHTGKYTCTAKTTVDSVSASADLIVRGPPGP
PGGVRVENIGDTFVTLTWSRGTDNHSPISKYTIRQKFVDSDEWKNAKTDPQDIEGNMETA
KVIDLIPWMDYEFSVVATNTLGLGEPSLPSAKIRTAEAAPTVAPSDVGGGGGNHRELTVT
WTPLPREYHYGSSFGYIVAFKPSTAKEWRKVTVPNPEGSRYVHKDDSLSPRTPFEVKVKA
FNSKGNGPFSLSALIYSAEDEPSEAPPQVTARSLSSSEIEVIWSSVTEPSVEGYEIRYRR
DIDTEAAAQRVRTIGTDTMARIRDLKPHTRYYVEVRAYNKAGVGPSSQQIAITTRKAPPS
MPPKIIDTTVLGTYFRISWEAVTPLDNESNVEGYKVLYRRAGTVNSTLLQTVGNNINIPI
HDEGDYIVEVRAYGEGGDGAVNSVKISKSSGVNAQVSYILLSFGLIFGAISCLEL
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgtggttcctgttgagtcatttttttgcattgtcattcatttgctgcttggca
gaagacagtaggcagcatggaccagtgtttgaagagcaaccactccctacaatctaccca
aaagagtctgaggaggcaaaagtgtctctaaactgccgggttcgggcaaatcccccccca
gtttacaggtggaaactgaacaaccgtgacattaatgtggatgatactcgttacaatatg
attggtggtaacctcgttatcaacaacccagaagatgtcaaggatcgtggcaaataccag
tgtcttgcaacaaacaagtacggaaccattgtcagcaaagaagccaacctgcaatttgga
tacctggagagatttccaacagaggagcgccaagctgtggaagtgaatttaggagttggg
gtcatgcttctttgtgctgctcctccccatttcccagatgacctcacctatcggtggcta
ctgaatgaattccccagattcatcatgtctgacaaacgccgttttgtctctcagaccact
gggaatctgtacattgcaaaagtggaagagagtgacatgggcaacttttcctgcattgtc
accagcccgtccatttccaaaagtgttttcagcaaatacattcctctcatccctcagact
gtcggcgttgtgaaaagatatcctgccgacatcaaagtcaggttcaccgacacccaagtc
ctgatgggccagaacctcactctcgaatgctttgcacttggaaacccaattcctcagatc
cgctggtggaaacaggagggaagtttgccaagcagtgctgagctgctcatctacaactca
gtgctaagactcaccaacatccagcctgaggatgaagggacttacgtgtgtgaagcagaa
aactccaaagcaacagaccgggttgagggacggctcaccgtacacgctcatccattctgg
attcggtcgatcaatgacaccatgcaagacatcgggagtgacttcacctggcagtgtgaa
gcaggaggcaagcctcaacccacttacaaatggcttcataatggagaggtcgtctatggg
gcccggttccgagtggctcgaggggagctgcgtatttcccgactgactctgcaagattcc
ggaatgtaccagtgtgtcacagagaacaaatacggatccctgtattccaacgcggagttg
aaagttctcgttttggccccagacttcaggctgaacccagtgaagaggaaactgctgggg
gccaggggaggtaaagtgctgatggattgcaagcccagagctgctcccaagccgaccttc
acatggagtaaaggcaccgagctcatcaagaataattccaggatgtccatttggttcaat
ggcactttggagatccgggatctgtctgaggctgatgagggagtctatacctgttttgca
gagaacaacagaggaaaggctaacagcagtggcactttagtagtgacagaacccactaaa
atcacccttgagccatcgaacattgatattaccgtaggggaaaatggcactatggagtgc
catgcatcccatgatcccatgctggacctatcattagtctggtcaacaaatggctacacg
attgactttgagaaagagaaagactacatggagcgtaggatagagaatagacagagtgga
gaattgttctttaaaaacgcgcagctaaggcacactgggaaatacacctgcactgctaaa
accaccgtcgacagcgtgtccgcatctgcagacctgattgtcagaggtccccccggaccc
cctggaggggtgcgagttgagaatattggagacacctttgtgaccttgacctggagtcga
gggacagacaatcacagcccaatctccaagtacactatccggcagaagttcgtcgattct
gatgaatggaaaaatgccaagacagatcctcaggatatagaaggcaacatggaaacagca
aaggtgatcgatttgatcccatggatggattatgaattcagcgtcgtagcaaccaatacc
ctgggcttgggagaacccagtttgccatccgctaaaatcaggacagctgaagcagctccc
accgtggctccgtctgatgttggaggaggtggtggaaaccaccgggaattgacagtgaca
tggacgcctctaccaagggagtaccattatggaagcagctttggttacattgttgccttc
aagccaagtacagcgaaggaatggaggaaagtcacggtgcccaaccctgaaggcagcaga
tacgttcacaaagatgactctttatctccgcgcactccatttgaagtcaaggtcaaagct
tttaacagcaaaggaaatgggccgtttagcctgtctgcattgatatattcagcagaggac
gagcctagtgaagctcctccacaagtgactgccaggagcctctcatcttctgaaatcgaa
gtgatatggtcatcggtgactgaaccatcagtggaaggctacgagatcaggtaccgaagg
gacattgacactgaggcagctgctcagcgagtaagaacaattggaactgacacgatggcc
aggatcagagatcttaaaccccacacacgttactatgtggaagtcagggcctacaacaaa
gcaggagttggcccttcaagtcaacaaattgcaatcacaacaaggaaagcacctcccagc
atgcctccaaaaataattgacaccacagtgctcggtacctatttcaggatttcctgggaa
gcagtcacacctttggacaatgagtcgaatgtggagggctacaaggtgctttatagaaga
gctggcacagtaaacagcacgctgttacagacagtcggaaacaacataaatataccgatt
cacgatgagggagactacattgtggaagtacgggcctatggggaaggaggagatggagca
gtgaattcagtcaaaatttctaaaagttcaggagtcaatgcgcaggtctcctacatcttg
ctcagtttcggcctgatctttggtgccatcagctgcctggagctgtga
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