Rhincodon typus (whale shark): 109911210
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Entry
109911210 CDS
T06055
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X4
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109911210 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtp03032
]
109911210 (topbp1)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109911210 (topbp1)
DNA replication proteins [BR:
rtp03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
109911210 (topbp1)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
109911210 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
109911210
NCBI-ProteinID:
XP_020366060
LinkDB
All DBs
Position
2:complement(137704538..137757612)
Genome browser
AA seq
1409 aa
AA seq
DB search
MCLDLFGRPEIVKMPSSAKPEPFLVKFIKTKGNDSEYFTKAYKAIKEFKSEDFLQIVHED
EVFNLKVKDSSLYICDPFEGDAYNHLKKLGCRIVGPQVVVFCLQQQQSVPEAVHPVYNMV
MADVVVSCTSLDKQTRDHVHKHVQLMGGRILRDFNISVTHLIAGEVGSKKYLVAASLKKK
ILLPSWVKACWEKAKKGIINLTDVNMAEHLCPPFLGCTICVTGLSSQDRQEVQRLTLENG
GQYTGQLKMNDCTHLIVQEPKGQKYECAKKWNIYCVSIQWFFDSIKHGTCQDESNYKVES
ETKPAEVTPNTSTPTNMGDALSSRPPSDVSHISSISTSCINESTFSSATVAKLEPPDDHL
EAIDLDLAEVPEDLLDGCKIYLSGFSGKKLDKLRRMINFGGGIRFNQVCEDVTYIIMGEE
DKELKQCLNKISNRPYVVTARWLVDCFSKKCLLPVEQYFHPSYQPDIPIPQRSSNQAQLT
LNGSKALRTSTVSPGRQQEADDDLLLQYLESNRTIVGPENQDKTRSNFSDTLHKTEYQKN
QSANTSACETESCAEQGVFWSKKFLIFGFANEDETYMAELIQSNGGKVLRPHSRTVADYA
VVPLLGTQVDATVAEVVTNTWLAMCIDQQCVLASQSNTLFTPISIVEGSTPLADCVLSVS
QFTGVERDALLNIAELLGARVQEYFVRKANLKKGMLASTHLVLQEPQGSKYEAAKKWNLP
AVTAAWLFASAQSGKKADESKFFVENAISAVAEVNQPITVSDMDKVPKQMPEHPLSKLKN
MQNSAVSPLDIKRFQSKAFQLVLSQQNRTEMTEKRADVGVPSQQKEANLLLDTPSKFLCK
DKLFKPSFDVQDALAILETPKNPDQRNRKMSTPLSEVIGRNLKVALANSTRNTIVPSAAS
PQLHVSKPALEEPKVLADVVICVSKKLGKKQGDLNAIAASLGADYRWSYDETVTHFIYQG
RQNDSNREYKSVKEKGIHIVSEYWLFACADEQRKVPESLYPHTYNPHMSLDMSAAQETRV
STRTCLSQARCRDEQTCGMPEAEELESENDEQPQVEITLQEKQNEECGDLTETSEMRENF
QRQLQEIISATRVERSVGHRGAMSRGSLEYSPASADSTVRSGRSRALESLRRSHSAAADI
NTEPSQNEQIIWDDPTAREERAKLANNMQWPGSPSQYSEQFQKNTEQVEERNAKHKDSLT
DSEIAAIEIPQCLPVTNGDIPLKDDRLTPTPQAPSIAFPLTKPPVAPQPKEQVAVGESVT
KETHIQRRFQLSSLNPQERIDYCHLIEELGAVVLDRQCFDPSCTHIIVGQPLRNEKYLAS
MAAGKWVLHRSYLEACRAAAKFIQEENYEWGSSFILDVLPGISVQQKKLAVAAMRWRKNL
EMLRQKDPTAEAQNLVCHMRRFYSPKRGI
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgtgtctggatctttttggaagacctgagattgtgaaaatgccgagctctgcaaagcca
gaaccttttctagtaaaatttataaaaacgaaagggaacgattctgaatatttcacaaaa
gcatataaggctattaaagaatttaaatctgaggacttcctgcagattgtacatgaagat
gaagtatttaacttgaaagtaaaagacagctcactttatatatgtgacccatttgaggga
gacgcttacaatcacctgaaaaagcttggatgtaggattgttggcccacaagtggttgta
ttttgtcttcaacaacaacagagtgtacctgaagctgtacatcccgtctataatatggtc
atggctgatgtggtggtttcgtgcaccagcttggataagcaaaccagggatcacgtacat
aaacatgtacaactgatgggtggtcggatccttcgagatttcaacatctcggtaactcat
ctgatagctggagaggttggaagcaagaagtatctagtagctgccagtctgaaaaagaaa
attttacttccatcctgggttaaggcatgctgggagaaagctaaaaagggcatcatcaac
cttacagatgtgaatatggcggaacacctctgtcctccgttccttggctgcacaatctgt
gtaactgggctgagtagccaggacagacaggaagtacagcgacttaccttggagaatggg
ggccaatatactgggcagctgaagatgaatgattgcacacatttgattgtgcaagaacct
aaaggccagaagtatgaatgtgcaaaaaagtggaatatatattgcgtatctatccaatgg
ttctttgattctatcaaacatggtacttgccaagatgaaagcaattacaaagtcgaatct
gaaactaaacctgcagaggtaactccaaacacttcaactccaactaacatgggagatgca
ctgagctcccgacccccctcagatgtgagtcatatttccagtattagcacaagctgtata
aatgaatctacattctcctctgccacggttgccaaacttgaaccccctgatgaccatctt
gaggcaatagatcttgatcttgctgaagttcctgaggacttgctggatggatgtaagatc
tatttgtctggatttagtggcaagaaattggacaaattaagacggatgatcaattttgga
ggtggtattcgatttaatcaagtctgtgaagatgttacctacataatcatgggagaagag
gataaggagttaaaacaatgtttaaacaaaatatcaaacaggccatatgtggttacggca
agatggttagtggactgcttttccaagaagtgccttcttcctgtggagcagtatttccat
ccaagttatcaacctgatattccaataccgcaacgttccagcaaccaagctcagttgact
ttaaatggcagtaaggcactaagaacatccacagtcagtcctggcagacaacaagaagca
gatgatgatctcctattgcaataccttgagagcaacagaactatagttggacctgaaaat
caagataaaacacgaagtaacttcagtgacactctccacaaaactgagtatcaaaagaat
cagtcagcaaatacttccgcatgcgaaacagaatcatgtgctgagcagggagttttttgg
agcaagaagtttctaatttttggctttgctaatgaagatgaaacctatatggctgaatta
attcagagcaatggtggaaaggtgcttcggccccacagtcggactgttgcagactatgct
gttgtgcctttattgggcacccaagtagatgcaactgtagcagaagtggttacaaacacg
tggctggcaatgtgcattgatcagcaatgtgtactggcttcacagtcaaataccttattc
actcctatatcgatcgtggaaggaagcacaccattggctgactgtgtgttgtctgtcagt
caatttactggggttgaaagagatgcactacttaacattgcagaactacttggagcacgg
gtgcaagagtattttgttcggaaagcaaatttgaagaaaggcatgcttgccagcacccat
ttggtcctacaggagccacaaggctccaaatatgaagctgcaaagaaatggaatttacca
gctgtgactgctgcttggttatttgcgtctgctcaatcagggaaaaaagctgatgaaagc
aaattctttgtggaaaatgctatcagtgctgttgctgaagtgaatcaaccgatcacggtc
tcagatatggacaaagtgccaaaacagatgcctgagcatcccttgtccaaactgaaaaac
atgcagaactctgctgtgagtccactggatataaagaggttccagagtaaagccttccaa
ttggtcttatctcaacaaaatagaactgagatgacagaaaagagagcagacgtaggagta
cccagccaacaaaaagaagccaacttgctacttgacacaccttcaaaattcctatgcaag
gacaagctcttcaagccatcatttgatgttcaggatgcattggcaattctggaaactcca
aagaatccagatcagcgtaacagaaagatgagtactccgctatctgaagtcattggcagg
aatctaaaagtagccctggcaaatagtacacggaacacgatagtgccatcagcagccagc
ccacaacttcatgtgtctaaaccagcactggaagagcctaaagtcctggcagatgttgta
atttgtgtgagtaagaaacttggtaagaaacagggggatttgaatgcaattgcagcctcc
ctgggagcagattacagatggagttatgatgaaacagtaacccatttcatctaccagggg
cggcagaatgacagcaatcgagaatacaagtctgtcaaagaaaagggcatacacatcgtt
tctgaatattggctgtttgcctgtgctgatgaacaaaggaaggtgcctgaatctctctat
cctcacacgtataatccacatatgagtttggatatgagtgcagctcaggaaaccagagtg
tccactcgtacatgtctttctcaagcaagatgcagagatgaacagacttgtggtatgcca
gaggctgaggaactagaaagtgaaaatgatgaacagccgcaagttgagataactctccag
gagaaacaaaatgaagaatgtggagatttgacggaaacttcggaaatgagagagaatttc
cagcgtcaattacaagaaataatttctgctacaagagtggagaggtcggttggacaccgt
ggagccatgtcaagaggatcactggagtactctccagcatcagctgatagcacagttcgt
tctggacgtagcagagcactggaatccctcaggcgctcccattcagcagctgcagacatc
aatacagagccatcacagaatgagcagattatctgggatgatccaacagctagagaagag
agagccaaactggccaacaacatgcagtggccaggcagcccctctcagtactctgagcaa
tttcagaaaaatacagagcaagtagaggaaagaaatgccaaacacaaagactcattaact
gattcagaaattgctgcgatagaaattcctcagtgtcttcctgtaacaaatggtgacatt
ccattgaaggatgatcgtctcacccctacacctcaggctcccagtatagcatttccactg
acaaaaccacctgtggcaccacagcctaaagaacaggttgctgttggtgagagtgttact
aaagaaacacacattcagcgccggttccagttatcctccctgaaccctcaggagcggatt
gactactgccacctcattgaggagttaggtgcagtagtactagatagacaatgctttgac
ccttcttgcacacacatcattgttgggcaaccattacgtaatgaaaaatacttggcttct
atggcagctgggaaatgggttcttcatcggtcgtatcttgaggcatgcagagctgctgcc
aaatttatccaggaggaaaattatgaatggggcagcagtttcatcctggatgtgttgcct
ggaattagtgtccaacagaagaaacttgcagtggcagccatgagatggaggaaaaacctg
gagatgctaagacaaaaagatccaactgctgaggcacagaacttggtctgccatatgagg
agattctactctcccaaaagaggaatctga
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integrated database retrieval system
