Rhincodon typus (whale shark): 109911258
Help
Entry
109911258 CDS
T06055
Name
(RefSeq) slit homolog 3 protein-like
KO
K06850
slit 3
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtp00536
]
109911258
Glycosaminoglycan binding proteins [BR:
rtp00536
]
Heparan sulfate / Heparin
Axon guidance molecules
109911258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
EGF
Laminin_G_2
Laminin_G_1
LRRNT
LRR_9
EGF_TEN
LRRCT
hEGF
LRR_14
JAG1-like_EGF2
EGF_DL_JAG
EGF_Teneurin
EGF_3
EGF_2
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
109911258
NCBI-ProteinID:
XP_048459567
LinkDB
All DBs
Position
12:4499540..5113647
Genome browser
AA seq
1518 aa
AA seq
DB search
MARFKDSFPGSVLLTLLFCGICTQACPNRCICSGSNVDCHHLGLKAVPRGIPRNTERLDL
DKNNITRISKMDFVGLKNLRVLHLEENQINVIERGAFQDLKQLERLRLNKNKLQILPELL
FQGTPKLSRLDFSENRIQALPRKAFRGIVDIKNLQLDNNHISCIEDGTFRALRDLEILTL
NNNNISIIPLTSFNHMPKLRTLRLHSNNLFCNCHLAWLSDWLRQRHPIGQYAQCTGPIHL
RGLYVADVPKKEFTCSGPQSSETQSCNAHATSCPPVCVCSNNIVDCRGKGLTEIPVNLPE
NIVEIRLEQNLIKTVGAGAFSQYKKLKRLDLSKNQISEIAADAFQGLRSLTSLVLYGNKI
TELPKGLFDGLISIQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTITKGLFTPLR
SIQTLHLAQNPFVCDCHLRWLADYLHNNPIETSGARCTSPRRLANKRINQIKAKKFRCSG
SDDYRTKLSNDCFMDLVCPEKCRCEGTVVDCSNQKLTRIPSHVPEYATELRLNDNELTVL
EATGIFKKLPNLRKINLSNNKVRDIREGAFEGASGVLELLLTGNELEMVHSRMFAGLSGL
KMLMLRNNLISCVNNDTFTGLSSVRLLSLYDNRVTTITPGAFNTLHSLSTINLLANPFNC
NCHLAWLGRWLRKRRVVSGNPRCQKPFFLKEIPIQDVAVQDFTCDVDNNESSCLQGPHCP
ELCSCVDTVVRCSNKGFRTLPKGIPKDATELYLEGNQLTSVPKELSNYKHLSLIDLSNNS
ISMLSNSSFSNMSQLSTLILSYNRLRCIPVHAFDGLKSLRLLTLHGNDISTIPNGAFSGL
SSLSHLALGANPLYCDCNLRWLSEWVKTGYKEPGIARCTGPEDMNEKLLLTTPTNKFHCK
GPLNIAILSKCNPCLSSPCKNNGTCNSDPVEFYRCTCPYGFKGQDCSVPINACMNSPCQN
GGTCRLSEGEKRGFRCLCPAGFEGQLCEINPDDCEDNDCENNSTCVDGINNYACLCPPNY
TGELCEEVVNYCVPSHNPCQHGSKCISRDRKYKCECLPGYTGENCQTDHDDCVENKCRHG
ARCVDAINGYTCVCPTGFSGLFCEIHPPMVLPRTSPCDNYNCQNGAQCIEVHNEPVCQCL
AGFAGQRCEKLVTVNFIGKDSYVVLPASQVRPQANISLQVATDKDNGLLLYKGDNDPLAL
ELYQGHVRLIYDASSYPPTTVYSVETINDGQFHTVELMMMNQSLSLVVDKGTPRSLGKLL
KQPTLSLNSPLYIGGIPPVSGVAALRQGPDHNLNGFHGCIHNVRINNELQDFRSLAQMPL
GVSPGCRSCNICKNGVCRSLDQSGITCDCHPGWMGPLCDQEAQDLCANNKCVHGTCVASD
SAYRCLCKEGYVGKLCDKGQLMDNCQNLKCDHGRCKISGQGEPYCECNTNFTGETCQTEL
LCQKEMIRDVYRKQQGYASCQTTVKVPRLECKGSCANGECCVPLRSKRRKYVFQCTDGSS
FVEDVERVVDCGCGSCSS
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atggcgagatttaaagacagttttccaggatctgtcctgctcacccttctcttttgtgga
atttgcactcaagcgtgtcccaaccgctgcatctgctctggatccaacgtggattgccat
catttgggattaaaggctgtcccgagaggaatacccaggaatacggagagacttgatctg
gacaagaacaacattacacggatttcgaagatggactttgttggactgaagaatctccgg
gttttgcatcttgaggagaaccagatcaacgtgattgaaagaggagcctttcaggatctg
aagcaattggaaagactgcgactcaacaagaataaactgcaaatacttcctgagcttctc
ttccagggcacccccaagctctcccgacttgacttcagtgagaaccggattcaagctctt
ccccgaaaagcattccgtggtattgttgacatcaaaaacctgcaactggacaataaccac
ataagttgcatagaggatggaacgttcagagccttgcgtgacctggagattctcacactc
aacaataacaacatcagcatcatcccattgaccagtttcaaccacatgccaaagctaagg
actttgcgacttcattccaacaacctgttctgtaactgccacttggcctggctttctgat
tggctgcggcaacgccatcccattggccaatacgcccagtgcactggccccattcacctg
aggggcctctatgttgctgacgtcccaaagaaagagtttacctgcagcggtcctcagtcc
tccgagactcagtcgtgcaacgcccatgctacatcatgtccgccagtgtgcgtgtgcagt
aacaacatcgttgactgccgagggaaagggctgaccgaaattccagtcaaccttccggaa
aacattgtggaaatacgtttggaacaaaatttgatcaagaccgtgggagccggtgcattt
agccagtacaagaagctcaaacgcttagacttgagtaagaatcaaatttcagagattgca
gcagatgcattccaaggactgcgatcacttacctcacttgtcctctatggaaacaagatt
actgaactccccaagggtctgtttgatgggctgatatcgattcagctgctattgctgaat
gccaacaagattaactgtttgcgtgtaaacaccttccaggacttgcagaacctcaatctc
ctttcactgtatgacaacaagctccagaccatcacaaagggactgtttacgccactccgc
tccattcaaacgctccacctggcccagaatccttttgtgtgtgactgccatctgaggtgg
ttggccgactatctccacaacaaccccattgaaactagcggtgcccgctgcaccagccca
cgccgactggctaataaacgcatcaaccagatcaaggctaaaaaattccgatgctcagga
tcagatgactaccggactaagctaagtaatgactgcttcatggacctggtttgccctgag
aaatgccgctgtgagggcaccgtcgtggactgctccaaccagaagctcaccaggataccc
agccatgtcccagaatacgccactgaactgcgattgaatgacaacgaattaactgtcttg
gaggcaacaggtatctttaagaagctaccaaacctgcgtaaaataaacttgagcaacaac
aaggtcagagatatccgggagggagcattcgaaggggcttccggagtcttggaattattg
ctgacaggaaatgaactggaaatggtccatagccgaatgtttgctggtctctctggactt
aagatgctgatgctgcggaataacctgatcagctgtgtcaacaatgacactttcactggc
cttagctctgtccggctactgtctctgtatgataaccgggtcaccaccatcacccctgga
gctttcaataccctccattctctctcaaccatcaaccttctcgccaatcccttcaactgt
aactgtcacctggcctggttggggcggtggctgaggaagagaagggtcgtcagtgggaac
ccacgctgtcagaagccgttcttcctcaaggagatcccgatccaagatgtggcagttcag
gatttcacctgtgacgtggataacaacgagagcagctgcctgcaaggcccccactgtccc
gaactctgcagctgtgtcgacacggtggttcgatgcagtaacaaaggatttcgcaccttg
ccaaaaggcattcccaaagatgcaactgagctatacttggaaggaaatcagctgacttca
gtccccaaagagctgtctaactacaaacatttatcactcatagatttaagcaacaacagt
attagtatgctgagcaattctagcttcagcaatatgtcccagctctcaacgctaattctg
agctacaaccgattgaggtgcattcccgttcatgctttcgacggtctgaaatctctgagg
ttgttgaccctacacggtaatgacatctccaccattcctaacggagcattcagtggttta
tcgtcactatctcaccttgcccttggggctaatcctctgtactgtgattgtaacctgcgt
tggctgtctgaatgggtgaagacaggctacaaggagccaggcatagctcgctgcacagga
ccggaagacatgaacgagaaactcctcctcacaacgcccacaaacaagttccactgcaaa
ggtccactgaacattgctatcttatccaagtgcaatccctgcttgtccagcccttgcaaa
aacaatgggacctgtaacagtgacccagttgagttctacagatgtacctgtccctacggt
tttaagggccaggattgtagtgttcccatcaacgcctgcatgaacagcccatgccaaaac
ggagggacctgtcgcctcagtgagggagagaagcgtggattcagatgcctttgtcccgca
ggttttgaagggcagttgtgcgaaataaatcctgatgactgcgaggataatgactgtgaa
aataactccacgtgtgtagatggaatcaataactacgcctgtctttgcccacccaattac
acaggtgaactgtgtgaagaggttgtgaactactgtgttccgagccataacccttgccag
catggctccaaatgtatctcaagggacaggaagtacaaatgtgaatgcttgcctggatac
actggtgaaaactgccaaactgatcatgacgactgtgtggaaaacaagtgtcggcacggc
gcacggtgtgttgatgccattaacggctacacatgtgtctgtcccactggcttcagtggg
ctgttctgtgagatccacccacccatggtcctaccccgtaccagtccctgtgacaattac
aactgccagaacggggctcagtgcatcgaggtacacaacgagcctgtctgccagtgtctc
gctggctttgcggggcagcggtgtgagaaacttgtcaccgtcaacttcatcgggaaggat
tcatatgtggtgcttccagcctcccaggttcggccgcaggcaaatatctcactccaggtt
gccactgacaaggacaatggtttactgctatacaaaggtgacaatgaccccctggctcta
gaactctaccaaggacatgttcggctgatatatgatgcttcaagctatccccctaccact
gtgtacagtgtggagacgatcaacgatggacaatttcacactgttgagctgatgatgatg
aatcaatcactgagcctggtcgttgataaaggaacccccaggagcctggggaagctgctg
aaacaaccaactctgagcctgaactccccgctgtatattggaggcatccccccggtctca
ggggtagcagcgctccgccagggacctgaccacaatctcaacggtttccatggctgcatt
cacaatgtgcgcatcaacaatgagctgcaggatttcaggagcttggcccagatgcccctg
ggcgtctctccaggatgcaggtcctgcaacatctgcaaaaacggtgtgtgccgctcgctc
gatcagtccggcatcacctgcgattgccatcctggctggatggggccgctgtgcgatcag
gaagcccaggatctctgtgctaacaacaagtgcgttcacgggacgtgtgtagcgtctgac
tctgcataccgctgtctgtgcaaggaaggctatgttggcaaactctgcgacaaaggtcaa
ctgatggacaactgtcagaacctgaagtgtgaccacggccgctgtaagatctctgggcaa
ggggagccgtattgtgagtgtaacaccaactttaccggagaaacttgccaaacagagctc
ctttgtcaaaaggaaatgatccgggatgtctatcgcaagcagcaaggctacgcctcatgc
cagaccacagtcaaagtccctcggctggaatgcaaggggagctgtgccaatggagagtgc
tgtgtgcctctacgtagcaagcgacggaaatatgtcttccagtgtacagacggctcctcg
tttgtggaagacgtggagcgggttgttgactgcggctgtgggagttgttcatcgtag
DBGET
integrated database retrieval system
