Rhincodon typus (whale shark): 109911530
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Entry
109911530 CDS
T06055
Symbol
si:ch73-234b20.5
Name
(RefSeq) vesicle-associated membrane protein 8 isoform X3
KO
K08512
vesicle-associated membrane protein 8
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04130
SNARE interactions in vesicular transport
rtp04140
Autophagy - animal
rtp04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
109911530 (si:ch73-234b20.5)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
109911530 (si:ch73-234b20.5)
04140 Autophagy - animal
109911530 (si:ch73-234b20.5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109911530 (si:ch73-234b20.5)
Membrane trafficking [BR:
rtp04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
VAMP
109911530 (si:ch73-234b20.5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Synaptobrevin
Ferlin_C
DUF6366
SNARE
RIFIN
ODV-E18
Fusion_gly
Orf78
C3orf49
NCMAP
ApoA-II
DUF2321
ETRAMP
T2SSF
DUF6480
Motif
Other DBs
NCBI-GeneID:
109911530
NCBI-ProteinID:
XP_020366446
LinkDB
All DBs
Position
1:104316319..104386262
Genome browser
AA seq
105 aa
AA seq
DB search
MDITPASYSVDPGPEKLSNLQGQVNDVKGIMSQNIEKVLERGEKLDDLIIKTDDLQASAD
TFQKTSTKIARKMWWKNTKMIVIIVVIVVVIITLIILIATGVIPT
NT seq
318 nt
NT seq
+upstream
nt +downstream
nt
atggacataactcctgccagctacagtgtggatccaggccctgaaaagttatctaatctt
cagggtcaggtgaatgatgtaaagggcatcatgtcacagaacattgaaaaggttctggaa
agaggagaaaagctggatgatctaatcattaagacagatgatctccaagcatctgctgac
acttttcagaaaacttccacaaagattgcaaggaaaatgtggtggaaaaacacaaaaatg
attgttatcattgtggtaatagtcgttgtgatcatcaccctcatcattctcattgctaca
ggtgtcatcccaacataa
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