Rhincodon typus (whale shark): 109911750
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Entry
109911750 CDS
T06055
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109911750 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109911750 (wdr33)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109911750 (wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_WDHD1_1st
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
EIF3I
Beta-prop_TEP1_2nd
DSE1_N
Beta-prop_WDR90_POC16_2nd
ASA1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
CFAP251_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
eIF2A
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_DCAF4
Collagen
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
109911750
NCBI-ProteinID:
XP_020366720
LinkDB
All DBs
Position
13:complement(67156504..67260973)
Genome browser
AA seq
1214 aa
AA seq
DB search
MALEITSPPRFFHMPRFQHQGPRHTFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKFLENRVWQRDHRDLRAIQPDSAYYNDLVPPMGMLQNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNQNG
NWLLTASRDHLCKMFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSDEAVGEYDDIEPNSLSSIPGMGIPEQLKQALELEQANKEEVNEVEMAIPGLDWGMD
EMMLKDQKKVIQKKVPYAKPIPVQFQQAWSQNKVLTVPVEEPKIERAEEKKQDEKKKSQA
EIEQEMAALQYTNPLLLEQLKIERMAQKQAEQVQQQQVQQQQQQQQPQPQQQQQSPSLTP
QAFQGQGFISQPAQGFQQGHAPQQMQMNVPLGHSGPQGNFRPPAPPGQMGLQVPPLMQGP
VVSQGLMGPQGHAGPQGIHGPGGPPGPQGPQGPHAAQGFPGPPNHPGPQGQQGTHVQQGL
GPQVHSGSQGHPGSQGHPGSQGMQGPSGPRAMQGAPMQGQPQGMQGPQGIQGPPQGMQGP
SGPQGPQGAPGGPQGPSGGPAHPQQGTSNAQGPPHQAPSFQQPTKPSLLGDGPRMPFNQA
GNQVPPLMMVQQGPVRLPASNQGPPGPGPSKGESHGPPNHHMGHPQEMRRDPSTEREPER
GPLFRGSHDWGDPRENRGSAERRGPPQDYHDRFEGPDQYHDDFRKDERYGHRSREFENRM
GPLPLDDGWRRGPGPQRDFPPDQEYRDFGDPEHRGPNRGPPQAWDGRKPVDERFMREPED
MRFRGRRDDRFRPVRGASRHDGRGPRGREAFMNMDEFMGDEEFEQAEENARGRDPGGRGR
GRGAMRGGRGGLLPLPGHEEFPRFEGGRKSEKRPLSPGGHRDGWGGRGDRGEIHDANREP
GRSGPASSPRMPKSGRSNSHEGDRHDGFHRDDGFSGPGGPPPRGGPRGGPNWGRSGKGSG
PGPRRGSSRGSRGR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggctttggaaataacctcgccacctcggttttttcatatgccgaggttccagcaccag
ggaccaaggcacaccttttacaagcggccagactttgctcaacagcaagccatgcagcag
ctgacttttgatggcaagcgaatgagaaaggctgtgaaccggaagacgatcgattataat
ccatctgttattaagttcttagagaatcgagtttggcagagggatcaccgagaccttcga
gcaatccaacctgattccgcttattacaatgatttggtcccaccaatgggaatgctgcag
aatcctatgaatgctgtgacaacaaaatttgtaagaacctcaaccaataaagtgaaatgt
cccgtgtttgttgtcaggtggactcctgaaggaaggcggctagtcactggggcttcgagt
ggcgaatttactctctggaatgggctcacatttaactttgaaactattttgcaggctcat
gacagcccagttagagccatgacttggtctcataatgacatgtggatgctgacagctgac
catggtggatatgtgaagtattggcagtccaacatgaacaatgtgaagatgttccaagct
cacaaggaggcgattagagaggccagtttctcacctacggataataaatttgccacatgt
tctgatgacggcacagttcgaatctgggactttctccgatgccacgaggaacgcattctt
cgaggacatggtgctgatgtgaaatgtgtagactggcatcctaccaagggattggttgtg
tcaggaagtaaagacagccaacaaccaatcaaattctgggatcctaagacgggtcagagt
cttgcaacacttcatgcccacaaaaacacagtgatggaggttaagtggaatcagaatggg
aactggcttctcacagcatctcgtgatcacctctgcaaaatgtttgacatccgtaacttg
aaggaggaacttcaagtcttcagaggccacaaaaaagaggctacagcggtggcctggcac
ccagtccatgaagggctgtttgctagtggaggatcagatgggtctttgctgttctggcac
gtgggtgtggagaaggaggttggaggcatggaaatggctcatgaaggaatgatctggagt
ctggcctggcacccccttgggcacatactttgttcaggatccaatgaccacaccagcaaa
ttctggacgagaaacaggcctggtgataaaatgagggatcgctacaatctcaacctgctt
ccagggatgtcagatgaagcagtaggagagtatgatgacattgagccaaacagtttgtcg
agtattcctgggatgggcattcctgagcaactgaaacaggccttggagctggaacaagcc
aacaaagaagaggtgaacgaagtggagatggcaatcccaggattggactggggcatggat
gaaatgatgctcaaggatcagaagaaagtaatacagaagaaagttccctatgcaaagcca
attcctgttcagtttcaacaggcgtggtctcagaataaggttctcactgtgcctgttgaa
gagccaaagattgagagagcagaagagaaaaaacaggatgaaaagaagaaatctcaagca
gaaattgaacaggagatggctgctctacagtacacgaatcctctgctgttagagcaactc
aagattgaaaggatggcacagaagcaggcagaacaagtacagcagcaacaagtacagcag
caacaacaacaacaacaaccacaaccacagcagcagcagcaaagtccttctttaacacca
caggccttccaaggacaagggtttatctctcagcctgcacaaggatttcaacagggacat
gcacctcagcagatgcagatgaatgtgccccttggacattcaggaccgcaaggcaatttc
agaccaccagctcctccaggacaaatgggtcttcaggtccccccactcatgcagggtcct
gtagtatcacaaggattaatgggtccccaaggacatgcagggccacaaggaattcatggt
ccaggaggacctcctggacctcagggacctcaaggaccacatgcagcacaagggtttcca
ggccccccaaatcaccctggaccacaaggacagcaaggaactcacgttcaacaaggttta
ggtcctcaggttcactcaggctctcaaggacatcccggctcccaaggacatcctggatca
cagggaatgcaggggccatcaggcccaagagcaatgcaaggggctccaatgcagggacaa
ccccagggaatgcaggggccccagggaatacaaggacccccccagggcatgcaaggacca
tcaggacctcaggggccccagggtgcaccgggcgggcctcagggtccatcaggagggcca
gcacatcctcagcagggcacttcaaatgcacaagggccaccccatcaagccccttccttt
cagcaaccaaccaagccctcactgttgggtgatggacctagaatgccattcaaccaggct
ggaaaccaagtgccaccattgatgatggtacagcagggtccggttcgattacctgcttct
aatcagggacctccaggtcctgggccaagcaaaggtgaatctcatggtccgccgaatcat
cacatgggccatccgcaggaaatgaggcgtgacccgagcacagagcgtgaacctgaacga
ggacctctattcaggggatcccacgactggggcgatcctcgggaaaacagaggatccgca
gagaggcggggcccaccccaagactaccatgatcgtttcgaaggaccggatcagtatcac
gatgatttccggaaggatgagcgatatggccacaggtcgcgggaatttgagaaccgtatg
ggcccactacctcttgatgatggttggaggcgaggacctggtcctcaacgggattttcct
cctgatcaggagtacagggactttggggatcctgagcacaggggcccaaaccggggtcca
ccccaagcttgggatggacgcaaaccagtagatgaacgattcatgagggagcccgaggat
atgcgatttcgtgggcggagggatgacaggttccggcctgttcggggggcatctcgccac
gatggtcgtggtccacgaggtagagaggctttcatgaatatggatgagttcatgggcgat
gaggagtttgagcaagcagaggagaacgcgaggggccgtgacccgggaggaagaggtcgg
ggccgtggagcaatgcgaggcgggagagggggcctccttcctctacctggccacgaggaa
ttccctcgcttcgagggaggccgtaagtcggagaaacggccgctgtctccaggaggtcac
cgcgatggctggggagggcgaggagatcgaggggaaatccatgatgccaacagagaacca
ggccggagtgggccagcctcatcgccccgtatgcccaagtctggccgttccaactcgcac
gagggagaccgacacgacggttttcaccgagatgacggattcagtggccccggaggaccc
cctcctcggggtggacctagaggtggccccaactggggaaggagcggcaagggctcgggt
cctgggcctcgccgaggctcctccagaggcagcagaggaagatga
DBGET
integrated database retrieval system
