Rhincodon typus (whale shark): 109911840
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Entry
109911840 CDS
T06055
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109911840
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109911840
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109911840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
109911840
NCBI-ProteinID:
XP_020366808
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All DBs
Position
38:complement(20476326..20517186)
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AA seq
427 aa
AA seq
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MAENDVENELLDYEEDDENQTAAEPAAAPTKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEAVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPNIKAAVFFGGLSIKKDEDILKKNCPHIVVGTPGRILALTR
NKSLNLKYVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNDVQDRFEVNVAELPDEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgttgagaatgagctgttagattatgaagaggatgatgaaaaccag
actgcagcagagccggcagcagctccgactaagaaagatgtgaagggttcctatgtctcc
attcacagctctggcttcagagattttctgctcaaaccagagctgctgcgagccattgtg
gactgtggctttgagcacccttcagaagtgcaacatgagtgtattcctcaggccattctc
gggatggatatcctttgtcaggccaaatctggaatgggaaagactgctgtattcgttctt
gctactctgcagcagttggaagctgttgacgggcaggtgtctgttcttgtcatgtgtcac
acaagagagctggctttccaaatcagtaaagaatatgagaggttctccaagtacatgcca
aatatcaaggcagctgtattctttggagggttgtcaatcaaaaaagatgaagatatcctg
aagaagaattgccctcatattgtagtggggactccggggcggatcctggcccttacacgt
aacaagtcactcaatctaaaatatgtcaaacacttcgtgttagatgagtgtgacaagatg
ctggagcagcttgatatgcgcagggatgtccaggatattttccgtttgactcctcatgaa
aagcaggttatgatgttcagcgccaccctaagcaaggagatccgtcccgtctgtcgcaag
tttatgcaggatcccatggaggtgtttgttgatgatgagactaagctgacactccatgga
ttgcagcaatattatgttaaactaaaggacaatgagaagaatcgcaagctatttgattta
cttgacgtcctggagtttaatcaggtggtgatctttgtgaagtcagtacagcgctgtgtg
gcacttgcacagctgctggtagagcagaacttcccagctatcgctatccatcgaggaatg
gcacaggaagaaaggttgtctcgttaccagcagtttaaagattttcagagacgtatcttg
gtagcaacaaacctgtttggtcgaggtatggacattgagcgagtaaatattgttttcaac
tatgacatgcctgaggactctgacacatatctgcacagggttgctcgtgctggtaggttt
gggacaaagggtttggcaattacctttgtgtctgatgaaacagatgctaaagtactaaat
gatgttcaggatcgatttgaggtcaatgttgccgaactgccagatgaaatcgacatttcc
acctacattgaacaaagccgataa
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