Rhincodon typus (whale shark): 109911927
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Entry
109911927 CDS
T06055
Symbol
smarca1
Name
(RefSeq) probable global transcription activator SNF2L1 isoform X4
KO
K11727
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 [EC:5.6.2.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109911927 (smarca1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109911927 (smarca1)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromatin remodeling factors
NuRF complex
109911927 (smarca1)
CERF complex
109911927 (smarca1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
109911927
NCBI-ProteinID:
XP_020366891
LinkDB
All DBs
Position
14:complement(29902736..30010928)
Genome browser
AA seq
1035 aa
AA seq
DB search
MSEEEEEAAGTSGQGDTLGLCEQAGPEVKQEPSNVQSYVSPLQLKMPLKSANPGNDVDPE
YEEKMKMDRTKRFEFLLKQTELFAHFIQPAAQKTPSSPLKLKLGRPRTKQDEKQSLLSAG
DNRHRRTEQEEDEELLSESKKTSNVCVRFEESPSYVKSGTLRDYQIRGLNWLISLYENGI
NGILADEMGLGKTLQTIALLGYLKHYRNTPGPHMVLVPKSTLHNWMKEFKRWVPSLRAVC
LIGDKDQRAAFIRDIMMPGEWDVCITSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSK
LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDSWFDTNNCLGDQQ
LVERLHAVLRPFLLRRIKAEVEKSLPPKKETKIYVGLSKMQREWYTKILMKDIDILNSAG
KMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLVYNCGKMVVLDKLLPKLREQS
SRVLIFSQMTRLMDILEDYCMWRGYDYCRLDGQTPHEERERAIDSFNAFNSSKFIFMLST
RAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKTVRVFRLITDNTVEERIVE
RAEMKLRLDSIVIQQGRLIDQQTNKLGKDEMLQMIRHGATHVFATKDSELTDEDIDTILE
RGEKKTAELKERLQNLGESSLRSFTMETESLYSFEGEDYRGKQKIGLTEWIEPPKRERKA
NYAVDAYFREALRVSEPRAPKAPRPPKQPSIQDFQFFPPRLFELLEKEILSYRKSIGYKV
PRNPDLHNAAQVQKEEQRKIDDALPLNQKEVEEKEKLLTQGFTTWNKRDFNQFIKANEKY
GRDDIDNIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGESRIQRRISIKKA
LDAKMARYKAPFHQLRIQYGTNKGKNYTEEEDRFLICMLHKMGFDKENVYDELRQCVRNA
PQFRFDWFIKSRTAMELQRRCNTLISLIEKENSELEEKERAEKKRRGPKTGTAQKRRAET
TPETSGRKDWKKMKN
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaggaggaggaggcggccggtacctctggccagggggacacgctggggctg
tgtgaacaggctggccctgaagttaaacaagaaccttcaaacgtgcagagctacgtttca
cctttgcaacttaaaatgcctctgaagagcgcaaacccagggaatgacgttgatcctgaa
tatgaagagaaaatgaaaatggatcggaccaaaagatttgaattccttttaaaacagact
gagctgtttgcacatttcatccaaccagctgctcagaaaaccccatcatctccactcaag
ttaaaactagggagacctcgaacaaaacaagatgagaagcaatcactgctttcagctggc
gacaaccgtcatcggcgtactgaacaggaggaggatgaggaactactttctgaaagcaaa
aaaacatcaaatgtttgtgttcgatttgaagagtcaccatcctatgtgaaatcaggaaca
cttcgagattatcaaatacgagggttaaattggctgatctccctttatgaaaatggcatt
aatggtatccttgctgatgaaatgggtcttggtaagacactacagaccattgcattgctg
ggttacctgaaacattacagaaatacacctgggccacacatggttttggtaccaaagtcc
acgttgcataattggatgaaagagttcaaacgttgggttccatcacttcgtgcagtttgt
cttattggagacaaagatcaaagggccgcatttattcgagatattatgatgccaggcgag
tgggatgtctgcattacatcatacgaaatggtcataaaagaaaaatcggttttcaagaag
tttaactggaggtacttggtaattgatgaagctcatagaatcaagaatgaaaaatccaag
ctctctgaaatagtacgggagtttaaatcaacaaaccgtttgttactgacagggacacct
ttgcagaataatctccacgaattgtgggctttgctcaacttcctgttgcctgatgtattc
aattcttctgatgattttgactcttggtttgacacaaacaactgcctgggtgatcagcag
ttagtggaacgtttacatgcggtactccgaccattcttgctacggcgaataaaagcagag
gttgaaaaaagcttgcctcctaaaaaagagaccaagatctatgtcggcctcagtaaaatg
caaagggaatggtacacaaaaatcttgatgaaggacattgacattctaaactctgctggg
aagatggataagatgcgcttgttgaacatcttaatgcagctccgaaagtgctgtaaccac
ccgtatctctttgatggtgctgaacctggtccaccttacactacagatactcatcttgtt
tacaattgtggcaagatggtagttttggataagctgctgcctaagttgagggaacagagt
tccagagtcctcattttcagccagatgactcgtttgatggatattcttgaagattattgt
atgtggcgtggctatgactattgtcgtcttgatggacagactccccatgaagaaagagag
cgggcaatagattctttcaatgctttcaacagttcgaagttcatattcatgctgagtacc
agagctggaggccttggtatcaaccttgcaacagcagatgttgttattttgtatgattca
gattggaatccgcaagtggatttgcaagccatggaccgtgcacatcgtattggccaaaag
aaaacagttcgtgtatttcggctgatcacagacaacaccgtggaagagaggattgtggaa
agggcggagatgaagctgcgacttgattccattgttattcaacaaggtaggctcattgac
caacagaccaacaaactaggcaaagatgaaatgctacagatgattcgccatggtgcaacc
catgtttttgctaccaaagacagtgagctaacagatgaggacattgacactatattggag
agaggagaaaagaagacagctgaactgaaagaacgtttgcaaaaccttggtgagagttct
cttcgatcgtttacaatggaaacagaaagtttatatagttttgaaggtgaagattacaga
gggaaacagaagattggtttaacagagtggattgaacctcccaaacgagagcggaaagcc
aattatgcagtagatgcatatttccgagaagctttacgcgtcagtgagccgagagcacca
aaggcaccccgacctccaaaacagccaagtattcaagatttccagttttttccaccacgc
ctatttgaactactggagaaagaaatcctttcctatagaaaaagtataggctacaaggtc
cccaggaatcctgacttacacaatgcagctcaggtacaaaaggaagaacagcggaaaatt
gacgatgcactgcctctcaatcagaaggaagttgaagaaaaagagaagcttcttacacag
ggtttcacaacttggaacaagcgggacttcaaccagtttatcaaagccaatgagaagtat
ggtcgagatgatattgataacattgcccgagaggttgaagggaaaactccggaagaggtc
attgaatactctgctgttttctgggaacgctgcaatgaattacaggacatcgagaagatc
atggcccagattgagcgtggggagtcaagaattcaaagacggattagcataaagaaagct
ttagatgcaaagatggcgaggtataaagctcctttccatcaactgcgtattcaatatgga
actaacaaaggaaaaaattatacagaagaggaagatcgcttcctgatctgtatgctgcac
aagatgggctttgataaggaaaatgtgtatgatgaactgcgacaatgtgtgcgcaatgcc
ccacagtttaggtttgattggtttatcaagtccaggaccgcaatggaactccagagacgc
tgcaatacattaatatctctaatcgagaaagaaaactcagaacttgaagaaaaggagcgt
gctgagaagaaacgacgaggacctaaaactggaacggcacagaagagaagggcagagaca
actccagaaacatctggacgaaaagattggaagaaaatgaagaattaa
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integrated database retrieval system
