Rhincodon typus (whale shark): 109912004
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Entry
109912004 CDS
T06055
Symbol
utp15
Name
(RefSeq) U3 small nucleolar RNA-associated protein 15 homolog isoform X1
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109912004 (utp15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtp03009
]
109912004 (utp15)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109912004 (utp15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_HPS5
WDR54
Beta-prop_EIPR1
Beta-prop_NWD2_C
WD_LRWD1
Utp8_C
Beta-prop_DCAF4
DUF7099
Motif
Other DBs
NCBI-GeneID:
109912004
NCBI-ProteinID:
XP_020366968
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All DBs
Position
3:96103714..96139322
Genome browser
AA seq
521 aa
AA seq
DB search
MSSYKPTVIQNYPKLGNKVTRDTLYWKNYKSPVQIKEFGAVTNINFSPIAPYNYAVTAST
RINIYGRYSQEPLKTFSRFKDTAYCGTYRDDGKLLAAGSEDGIVRLFDVGGRAALRQYSG
HTKAVQVTAFTSDKYRLMSGSDDYSVRLWDIPSSTELHSFKEHTDYIRCGCTSNLNADLF
VTGSYDHTVKVFDARMDKSVITMEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQL
LVSLRNHHKTVTCLCLNSSGQRLLSGSLDRHVKIYSTSTYKVVHSLDYATAILSLALAPE
DEAIVVGMTNSVLNIRHRKRNENKQENRKRGPSYRYFIKGKDYMPKKDDLLVSKPVRSHL
KKYDKLLKSFQVSLALDAVLESKVRVKTPEITTGVMQELNRRGVLQNALAGRDEKQLSVL
LSFLIRNVVDPRFTPVLINVAEIIIDIYSSVIGESSLVDNQFLKLQDLIEKEIDYQEELL
EVLGMMDTIFATMTTKKNAAVCGNQNCALIAGPKEEPMVVA
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttacaaaccaactgtaattcagaactacccaaaacttgggaacaaggtcaca
cgggacacattatactggaaaaattacaagagtcctgttcaaataaaagagtttggtgcc
gtgacaaacataaatttttctccaattgctccctacaattatgcagtaactgcttccaca
aggatcaacatatatggtcgatattctcaagaacccttaaaaacattctccagatttaag
gacacagcatattgcggtacatacagggatgatggaaagctgcttgctgcaggcagtgag
gatggtattgttcgcctttttgatgttggtggtcgagcagctcttagacaatacagtgga
cacactaaagcagttcaagtcactgcgtttacctctgacaaatatcgtttgatgtctgga
tcagatgattattcagtccggctttgggatattccgagttcgacagaacttcactccttt
aaagaacacactgattatatacgatgtggttgtaccagcaatttgaatgcagacctgttt
gttacaggttcttatgatcatacggtgaaagtgtttgatgcccgaatggataaaagtgta
ataactatggaacatggacagccagtagagagtgtgttgctttttccatcaggcggactt
ctagtatcagcaggtgggcggtatgttaaagtgtgggatatgttgaaaggaggacagctg
ctggtttcgttacgaaaccaccacaagaccgtcacctgcttatgtctaaatagctcagga
cagaggctgctgtcaggctcacttgataggcatgtgaaaatctacagtacatccacgtac
aaagtagtccatagtctggattacgcaacagccattttgagcttggctttagcacctgaa
gatgaagctattgttgttggaatgactaacagtgtcttgaatatccgtcatcggaaacgc
aatgaaaataagcaagaaaacaggaaaaggggaccatcttacagatatttcataaaagga
aaagattacatgccaaaaaaggatgatcttttggtcagtaagccagtgaggtctcacctg
aagaagtatgacaaactattgaaaagtttccaagtttctcttgcacttgatgctgttttg
gagtcaaaagtcagggtaaagacgccagagattaccacaggtgtaatgcaagaacttaac
cggcgaggtgtacttcaaaatgcacttgcaggaagagatgaaaaacagctcagcgttctc
cttagcttccttatcaggaatgttgttgatccaaggtttacacctgttctaataaatgtt
gcagagattattattgatatttatagttctgtgattggtgagtcatcactggttgataac
cagttcctgaagctgcaagacctcatagagaaagagattgattatcaggaagaactgctt
gaggtcctcggaatgatggatacaatatttgcaaccatgacaactaaaaagaatgctgct
gtttgcggaaatcaaaactgtgccttaattgctggacctaaggaagaaccaatggtagtt
gcctga
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