Rhincodon typus (whale shark): 109912261
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Entry
109912261 CDS
T06055
Symbol
hps5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein isoform X1
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109912261 (hps5)
Membrane trafficking [BR:
rtp04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
109912261 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
109912261
NCBI-ProteinID:
XP_020367249
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All DBs
Position
17:complement(17041504..17085417)
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AA seq
1193 aa
AA seq
DB search
MSLPVLPEPCSHVLAELDSLDPLLSALRLDSSRLKCTCLSVSRKWLALGSSAGGLHLIQK
DGWKQRLMLVHKEGTLTHVACCQNDEDYVAVATSQGHVIVWELHHERRGKPERIYVSSEH
KGRQVTALCWDTTALRVFVGDNLGKVSGLKVNSSKQGKAAAFVMFPVQVITTVDSRVVQL
DYQEGRLLVSSLTRCYLCDTDKEKFWRIGNKERDGEFGACFLPGSKNTGFSQPLIFCARP
GSRIWEVNFEGEVLSTHQFKQLLGSPSLPIISHRSELHYNMTSSSPQSISFPRLLCLREN
YVLSWTDRGIYVFVPQSVQVLLWSELKDVQNIAVYKNELFCLHGDGRVTHLCLLSGERCT
ERLLRQDMWTLAAQVCCLFQHCITASRARKLLPVDRLEHLKSQLDAATQSHLIARLEEML
LKLEPFDSACSSRRSSFSSHESFNVLDSGIYRVISRRGSQSDEDSGSLHSHLSEEERLRE
FTSVQEEEQDNVSHSSLNIEGDRSETPIPFHLPLSFRSTSSRVSLQAMKESVSSFVRKTK
ETISTLHPNSDFRFKSEIKDSEPLQAQMEDLECSLSIDNEPQKEDKLQELKLATAEAMIK
LRNPLVLFDTSLLKETLQCWLPHLEKTFRFDVKTQILNDSSEVESAVFSHQDSVIFAYRE
MEMPAVLNHQEEENKLTAISCQENKEEPATFLQKEGEESMPLSFQEDEEQSISLSSHEEP
EVDSDLLPHQEQREESVTFVHQDQVNRPIPKHGKGAMEKTVAPKDAVVDDDPVSSESSSV
PFVTASPCSIPADLFMDMTELSTLCFELGMFESMMKDKSTAMELPEDATVTQACLYLRNY
FFLLDLIRVKRCITARNWSSPRVWQTLILGLQEVTQFHSISDTIKDGDLRKVLKLLSGEK
QLQSPFLLAHAARMYEKFGEIALRSFVQFYPHILPSDMKELCQKQPAHFLAYVDNLLKSK
PEDQRLHLLEAILQPKERKLDWLQLAVSHDAPQKIDTTDIDGNPRPHSHRFTWGYAQLIS
YFIQLPGDLETKKKMLDICKSYGFWPAYLSLCLQLGCRVEAFTVIVYLDDIGLLDEQNGL
LPETLEEWKFILELVRNHQRIAFCPAVENGDSVINGDADRSNSVTLENVAVLLAKTIGPD
RALSVLQDCSLHGSMSERFGRVCDILRIAEKRQRALVQSMLERCDRFLLSQQA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgccagtgcttccagagccatgcagccatgtcctggcagagttggactccctg
gatccccttttatctgctctgcggttagattcaagcagattgaagtgtacgtgtttgtca
gtgtctcggaagtggttggcactgggcagctcagctggtggactgcatctaattcaaaag
gacggttggaagcaaagactcatgttagtgcacaaggaaggaactctcactcatgttgct
tgttgtcagaatgatgaagactatgttgctgtagcaactagccagggacatgtgattgtg
tgggagctgcatcatgagcggcgtgggaaacctgaacgtatttatgtgtcgtcagaacac
aaaggccgacaagtcactgccctctgctgggatactactgctctccgtgtctttgtggga
gacaatctgggaaaggtttctggcctgaaagtgaattcctccaaacaaggaaaggctgct
gcatttgtgatgtttccagttcaagtgattacaacagtggactcaagagtggtgcaactt
gactatcaggagggcagattgttggtctcatctctcactcgctgctatctgtgtgacact
gacaaagagaagttctggaggattggaaacaaggagcgagatggagaatttggagcctgt
ttcttaccaggatcaaagaacactggattctcacagccactgatattctgcgcacgacct
ggttcacgaatatgggaggtgaactttgagggagaggtgctgagcacgcatcagttcaaa
cagttattgggatcgccttcacttcccattatttctcacagatctgagttacattacaac
atgacttccagttctccacaatccatctcttttcccaggctcctgtgcttgagggagaat
tatgttctgagctggacagaccgagggatctatgtgttcgttccgcagagtgttcaggtg
ttgctctggagtgagctgaaagatgtgcagaatattgctgtttacaagaacgaactcttc
tgtctccatggtgatgggcgggtaactcacctgtgtctgttgtcgggagagcgatgcaca
gagcgtctacttcggcaagacatgtggactctggctgcacaagtctgttgtctcttccaa
cactgcattactgcaagcagggcccgtaagctgttgcctgtggatagactggaacacttg
aagtcacagctggatgctgccacacaaagccaccttattgcccggttggaggagatgttg
ttgaagttggaaccctttgactcagcctgcagcagccggcggagcagcttttcttctcat
gagagttttaatgtcctagattcaggtatttatcgtgtgattagtcgtcgaggtagccaa
tcagatgaggactctggttcattgcacagccatctgtctgaagaggagaggctgagggaa
tttacttcagtacaagaggaagagcaagacaatgtctcccattcatccttgaatattgaa
ggtgatcggagtgaaacaccgattccatttcatcttccattatcattccgttccacatct
tcacgagtttctttacaggctatgaaggaaagtgtctccagctttgtcaggaaaacaaaa
gaaactatcagtacacttcatcccaactctgacttccgattcaaatcagaaataaaagat
agtgagccactccaggcgcaaatggaggacctggaatgcagcttgagcattgataacgag
cctcagaaggaggataaactgcaggagctgaaactggcaacagcagaagctatgattaaa
ctacgaaatcccctggttttgtttgacacctcccttctgaaggaaacactccaatgttgg
ctccctcatttggaaaaaacatttcgatttgatgtaaaaactcaaattctgaatgactcc
tcagaggtggagtcagcagtattcagtcaccaggattcagtgatatttgcctatagagag
atggagatgccagcagtactcaatcatcaagaagaagaaaacaagttaacagcaattagc
tgccaagagaataaagaggaaccagcaacattccttcaaaaagagggggaagagtcaatg
ccattaagttttcaagaagatgaggaacagtcaatatctctttcaagccatgaagaacca
gaagtggattctgacttgcttccccatcaagagcagagagaagagtcagtaacgtttgtc
catcaagaccaggtgaacagaccaatcccaaaacatggaaaaggagcaatggagaagaca
gttgcacctaaggatgcagtggtagatgatgatccagtttcatccgagtcgtccagtgtg
ccctttgtcacagcctctccctgcagcataccagcagatctctttatggacatgacagaa
ctgagcactttgtgttttgagttaggaatgtttgaaagtatgatgaaggacaaatccaca
gcaatggaactgcccgaagatgccactgtaactcaggcgtgtctgtatttgcgaaattat
ttcttcctgttagatttgataagagtgaagcgctgcatcacagctcgtaactggtcctct
cctcgggtgtggcaaactctcatcctgggattacaagaggtaacacagtttcactccatc
tctgataccattaaggatggagatctgcggaaggtgctgaagttactcagtggtgagaag
cagttacagagtcctttcctattagcacatgcagccagaatgtatgagaaatttggtgaa
attgcactgaggtcttttgtccagttctatccccacattctcccatctgacatgaaggaa
ttatgtcagaagcaaccagctcacttcttagcatatgtggacaacctgcttaaatccaag
ccggaggaccaaagattgcatctgttggaagccattcttcagcctaaagaaaggaaatta
gattggctgcaacttgctgtgtctcatgatgctcctcagaagattgacaccaccgatata
gatggaaatcccaggcctcactcccatcgttttacctggggctatgctcagctgatcagt
tactttattcagcttccaggagaccttgagacaaaaaagaaaatgttagacatctgtaaa
tcctatgggttctggcctgcatacctgtcactttgtctgcagttaggctgcagagttgaa
gcttttactgtcattgtttacctggatgatattggcttacttgatgaacagaatggtctg
ttgcctgagactttggaagagtggaagttcattctggagctggttcggaatcaccaacgc
atcgctttctgtcctgctgtggagaatggagacagtgtcatcaatggtgatgctgatagg
tcaaacagtgtcaccctcgagaatgtagctgtgctccttgcgaagacaattggcccagac
cgagcactctctgtcttacaggactgcagcctgcacgggagtatgtctgagagattcggc
agagtatgtgacatcctaagaattgcagagaaaagacagagggctcttgtccagtccatg
ctggagcgatgcgatcgtttcttgttgtctcagcaggcatag
DBGET
integrated database retrieval system
