Rhincodon typus (whale shark): 109912400
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Entry
109912400 CDS
T06055
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109912400
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
109912400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
zf-CCCH_4
zf-CCCH_2
UBA_7
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
109912400
NCBI-ProteinID:
XP_020367414
LinkDB
All DBs
Position
6:40186519..40204585
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AA seq
734 aa
AA seq
DB search
MGLNDHSVHENNIVLGLVHLNVESTDKPLHVVTSWSMVENIAMDKGYSTKENAMEWMMQN
SDNLDSDSELEQLGIAMLGAGPLNKAYQQLCRSPGLESNLLKCNVILQDFKLDGETKPKQ
DLRSTDDDKDYKTKMEFALKLGYSEEQVQLVLNKLGTDALPNDILGELVKLGNKLDSDTS
CGTSNPAILTPRDTISTDSQRSDSPVEELVDDGDNLKPVVIDGSNVAMSHGNKEVFSCRG
IKLAVDWFLERSHKDITVFVPAWRKEQSRPDALITDQEILRKLEKDKILVFTPSRRVQGR
RVVCYDDRFIVKLAYESDGIIVSNDNYRDLQNEKPEWKKFIDERLLMYSFVNDKFMPPDD
PLGRHGPSLDNFLRKRPVVPEHKKQPCPYGKKCTYGHKCKYYHPERGTQPQRSVADELRA
SAKNSIMKTTNEGGLVKSNSVPTSTKTEGMFDGKCTAPKRQSDPSIQTPLYNEVEEKLSN
KTRLETRSVPSLVSASNPSAAKVQGCAVSGSGMHLLTQDPGVPAQYSTILVNNSHGTHTS
YNQHPKCDSPVDGGYYSMMNPYHNLGVSGTHSPDQFSVDKEYRLNHVGSDCSSEGSISCG
SSDSYVGYNERAYPSSPVTVLEENLKCHQYHNRHQPFLHSYHDPVTRVQSYGQEEQKPLH
KTSASCMAPHFQHPVIGARSSCPSEYCPVPLSGQHPQNMHMGRALGTTRIESFSDSRLYE
NLPVRQRKPYMGQE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaatgatcattctgtgcatgagaacaacattgttctgggacttgtacatctc
aatgtggaaagcactgacaaaccgctacacgtggtaacatcttggtcaatggtggaaaat
atagcaatggataaaggatactctactaaagagaatgctatggagtggatgatgcaaaac
tcagacaacttggattcagacagtgaattggagcaattggggattgccatgttaggggct
ggtcctttaaataaagcttaccaacagctttgtagatccccaggcttagaatcaaatcta
ctaaaatgcaatgtgattctacaggatttcaaactagatggtgaaacaaaaccaaaacaa
gatttaagatcaactgatgatgataaagactacaaaaccaaaatggagtttgcactgaaa
cttggatattcagaagagcaggtacagcttgtcctgaataaattaggaacagacgctctt
cctaatgatatcctaggtgaacttgttaaactggggaataaacttgattctgatacttcc
tgtggcacaagtaaccctgcaattttgactccacgtgatacaatttcaacagattctcaa
agatctgactctcctgtggaagaattggtggatgatggtgataatctaaagcctgtggta
attgatggtagtaatgtggcaatgagtcatggtaacaaggaagtgttttcttgtcgaggc
ataaagttagcagtggactggtttttggaaaggagccataaggatatcactgtgtttgtg
cctgcctggaggaaggaacagtcaaggcctgatgccctcatcacagatcaagaaatcctg
cgcaagttggaaaaggataaaattctagtcttcacaccatcccggcgggtacaagggcga
agagtggtttgctatgatgatcgcttcatagtgaaattggcttatgaatccgatggcatc
attgtgtcaaatgataactacagggatttgcaaaatgaaaagccagaatggaaaaaattc
atagatgaaagattgcttatgtattcttttgttaatgacaaattcatgccacctgatgac
cctttgggtcgccacggacccagcttggataactttctgaggaagcggccggttgtacca
gaacataagaagcagccatgtccatatggaaaaaagtgcacttatggccacaaatgtaaa
tactaccacccagaacgaggtacacagcctcaacgttctgtggctgatgaacttcgtgct
agtgcaaagaactcaataatgaaaaccactaatgaaggaggtttggtgaagagcaacagt
gttccaactagtaccaagactgagggtatgtttgatggcaaatgtacagctcccaaaaga
cagtctgacccaagtatacaaacccctctttataacgaggttgaagaaaaactcagcaat
aaaaccagattggaaaccaggtctgtgccttctcttgttagtgcatcaaatccgtcagcc
gcaaaggtccaaggttgtgcagtatcaggttctggaatgcaccttttgacgcaagatcca
ggggtgccagcacagtactcgacaattctggtgaacaatagccatggaacacacacttcc
tataatcagcatccaaaatgtgactctcctgttgatggaggatattattctatgatgaat
ccatatcataatcttggtgtatctggtacacacagccctgatcaattttctgtagataaa
gaatacagactaaaccacgtaggttctgactgtagtagtgaaggtagtatcagctgtggt
agcagcgattcgtacgttggctataatgaacgagcctacccaagttctccagttacagtg
cttgaagaaaatcttaaatgtcaccaatatcataatcgacatcagccctttcttcatagt
tatcatgatcctgtaacaagagtacaaagttatggacaagaagagcaaaaaccactgcac
aaaacttcagcttcttgtatggcaccacatttccaacacccagtaattggagcccgctcg
agttgtccaagtgaatactgtcctgtacccctcagtggccagcatccacaaaacatgcac
atgggaagagctctaggaactacaagaattgaaagtttttcagattcacgtttgtatgaa
aacctgccagtgagacaaagaaaaccttacatgggtcaggaa
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