Rhincodon typus (whale shark): 109912640
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Entry
109912640 CDS
T06055
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
KO
K17302
coatomer subunit beta'
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109912640 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109912640 (copb2)
Membrane trafficking [BR:
rtp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
109912640 (copb2)
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
109912640 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
109912640
NCBI-ProteinID:
XP_020367761
LinkDB
All DBs
Position
13:53319198..53345283
Genome browser
AA seq
943 aa
AA seq
DB search
MSVAAMHSDLLPLRLDIKRKLTARSDRVKSVDLHPSEPWMLASLYNGSVCVWNHESQTLV
KTFEVCDLPVRASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPT
QPYILTSSDDMLIKLWDWEKKWTCTQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVW
QLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQ
NVSCVSFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGY
DEGSIIIKLGREEPAMSMDASGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGS
CEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNS
VVKIFKNFKEKKSFKPDFGAEGIYGGFLLGVRSMNGLAFYDWDTTELIRRIEIQPKHIFW
SDSGELVCIATEDSFFVLKYLAEKVATAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWV
GDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKDLNIVSYSLLVS
VLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKSQALAVSTDPEHRFELALQ
LGELKIAYQLAVEAESEQKWKQLAELAISKCQFTLAQECLHHAQDYGGLLLLATASGNAP
MVNKLAEVVEKDGKNNVAFMTYFMQGKLDNCLELLIKTGRLPEAAFFSRTYLPSQVSRVV
KLWRENLAKINQKAAESLADPTEYENLFPGLKEAFVAEQYLKETSKTKERPARDYPLVTP
NEERNVIEESKDFTPSHHGASVEDSKDEQETMSSVSTPVASMIADAKAVLESDPAYVVTA
PVPRGMDIETKKVFQFEQDKKTHLSKSMFVKINIDSSCKDELH
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtggcagccatgcattctgatctgctgcctctgagactagacatcaaacggaaa
ctgactgctcggtctgaccgagtgaaaagtgttgacttgcatccaagtgaaccatggatg
ttggccagtctttacaatggcagtgtctgcgtgtggaaccacgaatcccaaactcttgtg
aagacatttgaagtgtgcgacctgcctgtcagggcatccaagtttgtggcacgaaagaac
tgggtcatcacaggagcagatgacatgcaaatcagagtcttcaattacaacacactggag
agagttcacatgtttgaagctcattcagattacattcgttgtattgctgttcacccaact
caaccttacatcttgaccagcagtgatgacatgcttatcaaactgtgggattgggagaag
aagtggacctgcacccaggtttttgaagggcacactcattatgttatgcaaattgtcatc
aacccgaaagacaacaaccaatttgcaagtgcatccttagataggaccattaaggtgtgg
cagcttgggtcatcctcacctaatttcaccttggagggccatgaaaaaggagtgaactgc
attgactactatagtggtggtgataagccctatctgatttctggagctgacgatcgccta
gttaaaatctgggattaccagaataagacttgtgttcagacactggagggccatgctcag
aatgtctcttgtgttagcttccatcctgaacttccaattatcatcactggatcagaggat
ggtactgttcgtatctggcattcgagcacttaccgcctagaaagtactctgaattatggg
atggaacgagtctggtgtgtggcaagtctgagaggctccaacaatgtggctcttggctat
gatgaaggcagtatcatcattaagctgggacgtgaagaacctgcaatgtctatggatgct
agtggtaaaattatttgggccaagcattctgaagtccagcaggctaacctgaaagcaatg
ggagatactgagataaaagatggtgaaagactgcctttggctgtgaaggacatgggaagc
tgtgagatttatccacagacaattcaacataatcccaatggaaggtttgtggtagtctgt
ggtgatggtgaatacattatctacacagcgatggctttgagaaataagagctttggatct
gcacaggagtttgtatgggcacatgattcttctgaatatgcaatcagggaaagcaacagt
gtggtgaaaatattcaaaaattttaaagaaaagaaatcatttaagcctgattttggagca
gaaggcatctatggagggttcctcctcggtgtccgctcaatgaatggcttggcgttttat
gactgggacaccactgagctcatccgccgaattgaaatacagcccaaacatatattttgg
tcagattctggtgaactagtgtgcattgctacagaggattccttctttgttttgaaatat
cttgctgagaaagtggctacggcacaggaaacacacgaaggagttacagaagatggcatt
gaagatgcctttgaggttcttggtgaaattcaagaaattgttaagactggattgtgggta
ggagactgttttatctacaccagctctgtgaacaggctcaattactatgttggtggagag
attgtcaccattgcccatcttgacagaacaatgtacctcctgggttatatcccaaaagat
aatcgactgtatttgggagataaagatttgaacatcgtcagctattctttgcttgtctct
gtgctcgaataccaaactgcagtcatgaggagggacttttccatggctgacaaggttctt
cccacaattccaaaggaacagaggacaagagtagcacacttccttgagaaacagggtttc
aaatcacaggctcttgcggtatccactgatccagagcaccgctttgagcttgcactgcag
cttggagagctcaagattgcatatcaattggctgtagaagcagagtcagaacagaagtgg
aagcagttggcagagctggcgatcagtaagtgccagtttacccttgctcaggagtgttta
caccatgcacaagattatggtggactgttgctgctggctactgcctcaggcaatgctcca
atggttaacaaattagcagaagttgtcgaaaaagatggcaagaacaatgtggcctttatg
acttatttcatgcaaggaaagcttgacaattgtttggaattgctgataaaaacaggacgt
ctcccagaagctgcctttttttccagaacctacttgccaagtcaggtttctagggttgtg
aagctctggagagagaatcttgccaaaataaaccaaaaagctgcagaatctcttgctgac
cccacagaatatgaaaacctattcccaggcctaaaagaagcttttgtagctgagcaatac
ctgaaagaaaccagcaagactaaagagagacccgccagggattaccctcttgtcactcca
aatgaagaaaggaatgttattgaagagtcaaaagacttcacaccatctcatcatggagca
tcagttgaggattctaaagatgaacaggaaaccatgtcaagtgtgtctacaccagttgca
tcaatgatagcagacgcaaaagctgtattagaatcagaccctgcttacgtggtgactgca
cctgtcccacgaggaatggacattgaaactaaaaaggtatttcaatttgagcaagataag
aaaactcatttaagcaaatccatgtttgtaaagatcaatatcgactcaagctgtaaagat
gaactccattga
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