Rhincodon typus (whale shark): 109912642
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Entry
109912642 CDS
T06055
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 4
KO
K06675
structural maintenance of chromosome 4
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109912642
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromosome condensation proteins
Condensin I
109912642
Condensin II
109912642
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
TPR_MLP1_2
ATG16
Motif
Other DBs
NCBI-GeneID:
109912642
NCBI-ProteinID:
XP_048460069
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All DBs
Position
13:46685847..46758505
Genome browser
AA seq
1090 aa
AA seq
DB search
MDKLYQFSENRKIKRSISNNMFVLLQGEVEQIAMMKPKGQNEHSEGMLEYLEDIIGSERL
KEPIQILCRRVEILNERRGEKLNRVKMVEKEKDALEGEKNHAIEFLILKNEIVKNRNCVL
QYYIHDVQKRIADLGAQKQKIHEDTQDTRDRSAKLMEDIKIKNNDLKHLEKKLGKISKFI
EEKKEEFAQFDLQDVKVREKLKHSKSKEKKLQKQLQKDIEKLEELKNIPGDSENTIRDAT
ARREELEQNKVKEEEKLRKVMDSLKQETKGLQEDKEMKEEELMELSKAVNESRSKMDVAQ
SELDIYLSHHKSALDQLNQAKAALATNINTLKERKATIKDVETKIPQCEQELQKDEKELE
KIIQSEAQIRNNVYELRQKVEEAKSSLTVNRSRGRVLEAVMQQKNTGKIPGIYGRLGDLG
AIEEKYDVAISSSCGALDNIVVDTIDTAQECVKFLKKQNIGVATFICLDKMKVWERNMGK
IQTPEKVPRLFDMVKIKDAAIRPAFYFALRDTLVAKDLEQATRVAFQKDKRWRVVTIEGQ
IIEQSGTMTGGGGRVMKGRMGSSLVVEITPEEMDKMENKLQKDLAVAQKYQEQKSHLEEK
VVKERQSIREMKNTLEKYTASIQGLTEQQVHLAIQVKDFEANVATAAPDQNKQKELQKTL
EAFKKEYEKAAAKAGKVETEVKRLHTLIIDINSKKLKTQQDKLDQLNKQIDDCASSVTKA
QVAIKTAERNFKKAEEAVNRAKGEIEENKREVEDLTEELKQVEEKGAVVLKECSEAQESL
VTVTEEHNCLLQKLKEIQEEQQALQKETLNIRLKLEQIDGHIAEHQSKIKFWQREVAKLC
LHPIDKPAAELPKLSEEALQEIKNPDVINNQIALLEAKCLEMKPNLGSVEEYKKKEELYL
RRVAELDEITNERDKFRRAFEDLRKQRLNEFMAGFNMITNKLKENYQMLTLGGDAELELV
DSLDPFAEGIMFSVRPPKKSWKKIFNISGGEKTLSSLALVFALHHYKPTPLYFMDEIDAA
LDFRNVSIVAHYIYEQTKNAQFIIISLRNNMFEIADRLVGIYKTNNTTKSVATNPKVISL
QALPEVTSTA
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggacaagttgtaccagttttctgaaaacaggaaaattaagaggagcatcagtaataac
atgtttgttctgcttcagggtgaggtggagcaaattgccatgatgaagccaaaaggccaa
aatgaacacagtgagggtatgttagaatatctcgaagacataattgggtcagaacggtta
aaagaaccaatacagattctttgtcgcagagttgagattttgaatgaacggagaggagaa
aagcttaatagggttaaaatggtggaaaaagaaaaggatgcgttggaaggagaaaaaaat
catgcaattgagtttctgatcttgaaaaatgagattgtaaagaacaggaattgtgtcttg
caatattacattcatgatgtgcagaaaaggatagctgatctaggagcacaaaagcaaaaa
atccatgaagatactcaagatacacgtgacagaagtgccaaacttatggaagacataaaa
ataaaaaataatgatttgaaacaccttgaaaaaaaactagggaaaatttcaaagtttatt
gaagagaagaaggaagagtttgcacaatttgatttgcaagatgtcaaagtccgagaaaag
ctcaaacattcaaagagtaaagaaaaaaaactgcagaagcaactacaaaaagacatagag
aagctggaagagttgaagaatataccaggtgatagtgaaaataccatcagagatgcaaca
gctagaagagaagagctcgaacagaataaagtaaaggaagaagagaagctgagaaaagta
atggacagtctcaaacaggagactaagggattgcaagaagacaaagagatgaaagaggag
gagctcatggagttgagtaaagcagtaaatgagagtagatcaaagatggatgtggctcag
tcagaactagatatctacctaagtcaccataaatctgctttggaccaactcaaccaggct
aaagcagccctggctaccaatattaacacacttaaagaaagaaaggcaacaattaaagat
gtggaaaccaaaataccacagtgtgagcaagaactgcaaaaggatgaaaaggaacttgaa
aaaataatccagtctgaagctcaaatcagaaataatgtttacgaactacgacaaaaagtt
gaagaagcaaagagttcccttacagtaaatcgcagccggggtagagttttggaggcagtc
atgcaacagaagaatactggtaaaattcctggaatctatggaagactaggtgatttgggt
gctattgaggaaaagtatgatgttgccatttcctccagttgtggtgccctggataacatt
gttgtggacacaattgatactgctcaagaatgtgttaaatttctgaagaaacaaaatatt
ggagtagcaacttttatttgcttagataagatgaaagtttgggagagaaacatgggcaag
atccaaactccagaaaaagttccccgtctctttgatatggtcaaaataaaggatgcggct
attcgtcctgcattttactttgcacttcgtgacacacttgttgctaaggatctagaacag
gcaacacgcgtcgcattccagaaggacaagcgctggagagtggtgaccattgagggacag
ataatagagcaatcaggtaccatgactggtggtggaggaagagttatgaagggtaggatg
ggatcttcattagttgttgaaattactccagaagagatggacaagatggagaataaattg
cagaaggatttagcagtggcacaaaaataccaagaacagaaaagtcatttggaagaaaag
gtagttaaggagcggcagagcatccgtgagatgaaaaatacgttggaaaagtacacagca
agcattcagggcctgactgagcagcaagttcacttggcaattcaagtgaaggactttgaa
gcaaatgtggcaacagcagctcctgatcagaacaaacagaaagagctgcagaaaacactg
gaagcttttaagaaagagtatgaaaaagctgcagcaaaggctggtaaagtcgagacagag
gttaaacgattgcacacccttatcattgacatcaacagtaaaaagctgaaaacccaacag
gataaactcgaccaacttaacaaacaaattgatgattgtgcctcatccgtcacaaaggcc
caagttgctatcaaaacagcagaaaggaactttaaaaaggcagaagaagcagtgaatcga
gctaaaggagaaattgaagagaacaaaagggaggttgaagatctaacagaagaattgaag
caagtggaggaaaagggtgctgttgtgctgaaggaatgcagtgaagctcaggaatcctta
gtaactgtgactgaggaacataactgtttacttcaaaagctaaaagaaattcaggaagaa
caacaggcacttcagaaggaaacactcaatatacgactaaagttggaacagatagatggg
cacattgcagagcaccaatcaaagatcaaattctggcagagagaggtagcaaaactctgt
ttacatcctattgataaaccagcagctgaacttccaaaattgagtgaggaagctcttcag
gaaatcaaaaatccagatgtgataaataatcagattgcactactagaggctaaatgtcta
gaaatgaagccaaacttgggttctgttgaagaatataagaagaaagaagagctataccta
cgccgtgtggcagagctggatgaaatcactaacgaaagggataagtttagacgtgccttt
gaagacctgaggaagcaacgtcttaatgaatttatggctggctttaatatgatcactaat
aaactgaaggagaattaccaaatgcttacactgggtggagatgctgagttggagttggtg
gacagtctagatccgttcgctgaaggaattatgttcagcgtacgtccgccaaagaaaagc
tggaaaaaaattttcaatatttctggtggagagaagactcttagttctctggctctggtt
tttgcacttcaccattacaagcctactcctttgtattttatggatgagattgatgcagca
ctggatttcagaaatgtttcaattgttgctcattatatctatgaacagaccaaaaatgct
cagttcatcattatttccttgaggaacaatatgttcgaaattgctgacaggctggtcgga
atctacaagacaaacaatacaacaaagagtgttgcaaccaaccctaaagtcattagtctt
caagcacttcctgaagtaaccagtacagcttga
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