KEGG   Rhincodon typus (whale shark): 109912877
Entry
109912877         CDS       T06055                                 
Symbol
pdlim3b
Name
(RefSeq) PDZ and LIM domain protein 3b
  KO
K23353  PDZ and LIM domain protein 1/2/3/4
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109912877 (pdlim3b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:rtp04990]
    109912877 (pdlim3b)
Domain-containing proteins not elsewhere classified [BR:rtp04990]
 LIM domain-containing proteins
  PDZ-LIM family proteins
   109912877 (pdlim3b)
SSDB
Motif
Pfam: DUF4749 PDZ LIM PDZ_6 PDZ_2
Other DBs
NCBI-GeneID: 109912877
NCBI-ProteinID: XP_020367909
LinkDB
Position
3:104484514..104568330
AA seq 319 aa
MPQNVVLAGPGPWGFRLTGGADFNQALTVSRVTPGSKASLANLSPGDVILAIDGISTDAM
THVDAQNRIKAASSQLSLKIDRPETKLWSPQVTEDGKANPFKINLEAEPQEFKSIGESHN
RKAQPFLAAGNIDDKRQVVSATYNSPIGLYSAGNIQDAIQGQLCGLAIDPQEKVEPAPGV
ENSAVYKMLHDNQEEKNEPRQSGSFRAIQDYLEAEESGTRPVVTRSVRAPVTKVGASTGS
VQKLPLCDKCGNGIVGTVVKARDKYRHPECFVCSDCGVNLKQKGYFFIEGQLYCEAHARA
RTKPPEGYDAVPVYQNMKV
NT seq 960 nt   +upstreamnt  +downstreamnt
atgccgcaaaacgtggttttggcaggaccaggtccgtggggttttagactgaccggtggg
gcggattttaaccaggctctgaccgtctcccgggtaacacctggaagcaaggcctcacta
gctaatctctcccctggtgatgtcattctggccattgatggaataagtacagacgctatg
acacatgttgatgctcagaataggatcaaggctgcctccagtcagttaagcctcaagatt
gaccggcctgaaactaagctttggtctcctcaagtcactgaagatggcaaagcaaatccc
ttcaagattaatttagaggctgagccacaggaattcaaatctattggagagtcccataac
agaaaggcccagccatttcttgctgcaggaaacattgatgacaaaagacaggtagtgagt
gccacctataattctccaattggcctatattctgctggcaacatacaagatgccatccag
ggacaactatgtggcctggccattgacccacaggagaaagttgagccagcaccaggagtt
gaaaactcagcagtctacaagatgctacatgacaaccaggaggaaaagaatgagccgaga
caatctgggtccttccgtgcaatccaggattacctggaggcagaagaaagtggtactcgc
cctgtggtgactcgaagtgtgagggctccagtgacaaaagtcggtgcttccactggaagt
gttcagaagctgccactgtgtgacaagtgtggaaacggaatagttggcacagtagtgaag
gcccgtgacaagtatcgacacccggaatgctttgtttgttctgactgtggcgtgaacctc
aagcagaaaggttactttttcatagagggacaactgtactgtgaagcccatgcaagagca
agaacaaaaccaccagagggatatgatgctgtccccgtttatcagaacatgaaggtttaa

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