Rhincodon typus (whale shark): 109912877
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Entry
109912877 CDS
T06055
Symbol
pdlim3b
Name
(RefSeq) PDZ and LIM domain protein 3b
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109912877 (pdlim3b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
109912877 (pdlim3b)
Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
109912877 (pdlim3b)
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Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
109912877
NCBI-ProteinID:
XP_020367909
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All DBs
Position
3:104484514..104568330
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AA seq
319 aa
AA seq
DB search
MPQNVVLAGPGPWGFRLTGGADFNQALTVSRVTPGSKASLANLSPGDVILAIDGISTDAM
THVDAQNRIKAASSQLSLKIDRPETKLWSPQVTEDGKANPFKINLEAEPQEFKSIGESHN
RKAQPFLAAGNIDDKRQVVSATYNSPIGLYSAGNIQDAIQGQLCGLAIDPQEKVEPAPGV
ENSAVYKMLHDNQEEKNEPRQSGSFRAIQDYLEAEESGTRPVVTRSVRAPVTKVGASTGS
VQKLPLCDKCGNGIVGTVVKARDKYRHPECFVCSDCGVNLKQKGYFFIEGQLYCEAHARA
RTKPPEGYDAVPVYQNMKV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaaaacgtggttttggcaggaccaggtccgtggggttttagactgaccggtggg
gcggattttaaccaggctctgaccgtctcccgggtaacacctggaagcaaggcctcacta
gctaatctctcccctggtgatgtcattctggccattgatggaataagtacagacgctatg
acacatgttgatgctcagaataggatcaaggctgcctccagtcagttaagcctcaagatt
gaccggcctgaaactaagctttggtctcctcaagtcactgaagatggcaaagcaaatccc
ttcaagattaatttagaggctgagccacaggaattcaaatctattggagagtcccataac
agaaaggcccagccatttcttgctgcaggaaacattgatgacaaaagacaggtagtgagt
gccacctataattctccaattggcctatattctgctggcaacatacaagatgccatccag
ggacaactatgtggcctggccattgacccacaggagaaagttgagccagcaccaggagtt
gaaaactcagcagtctacaagatgctacatgacaaccaggaggaaaagaatgagccgaga
caatctgggtccttccgtgcaatccaggattacctggaggcagaagaaagtggtactcgc
cctgtggtgactcgaagtgtgagggctccagtgacaaaagtcggtgcttccactggaagt
gttcagaagctgccactgtgtgacaagtgtggaaacggaatagttggcacagtagtgaag
gcccgtgacaagtatcgacacccggaatgctttgtttgttctgactgtggcgtgaacctc
aagcagaaaggttactttttcatagagggacaactgtactgtgaagcccatgcaagagca
agaacaaaaccaccagagggatatgatgctgtccccgtttatcagaacatgaaggtttaa
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