Rhincodon typus (whale shark): 109912932
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Entry
109912932 CDS
T06055
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtp01002
]
109912932 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109912932 (usp42)
Enzymes [BR:
rtp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
109912932 (usp42)
Peptidases and inhibitors [BR:
rtp01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
109912932 (usp42)
Ubiquitin system [BR:
rtp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
109912932 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
109912932
NCBI-ProteinID:
XP_048465227
LinkDB
All DBs
Position
21:19092316..19160707
Genome browser
AA seq
1321 aa
AA seq
DB search
MHKIGAGLQNLGNTCFLNSALQCLTYTPPLANYMLSREHSRACNEQGFCMMCMMQNHITQ
VFSSSGNVIKPVSVINDLRRIAKHFRFGNQEDAHEFLRYTVDALQKACLNGSNKLDRQTQ
ATTMIYQIFGGYLRSRVKCLNCKGVSDTYDPYLDIALEIKTAPNITKALEQFVKPEQLDG
ENAYKCTKCKKMVPASKRFTIHRASNVLTLSLKRFANFTGGKITKEVRYSEYLDVRPYMS
QNNGEPVVYVLYAVLVHSGFSCHAGHYYCYIKASNGQWYQMNDSVVSSSDIRSVLNQQAY
VLFYIRSHDTKNSSEHCNHPGHSSPRPSVNQRLTNNQTVSGFIGPQLPPHRTKNSSHLAN
GNCSQKEVPGSAVPSTSGIRTISTSPGPSQSRSLPRPSVIPESSKRQKLSFSIQPSKQGT
RQAPTQTNLHCSPLENLYKTPSIVSHTNVSPSTSGTSATGSPPSAPTALAIVAAKPIASN
TASSHLIVNGQPKGSSSSLVPYNEESSEDSDEEPKSLVKENGYVKSINGTLNGTRHCTHL
NINSLSTATSDNCHSENLSERVTTKTDVLKEVGDCDKNHQICESTVSQMQSLNRSANGLS
TTKESSADKASTVPPIPNTEKITQISTSSIKHEKASEEVRENQNQLLMSSKASSAINRSG
GGGDADTVHTYMADKQANLLISQLKGAIDGPSTFSTVNPVKNNIELQRNVAECCHVNCSS
HDQCPVHKVHAIPEITEIQEKLRPSQIKEEAQKVDHKTNGHGFENKQSSQDLGNKIPELE
IHSNKPQSNSNQESILENESQPSTEHSSKGRTNQNKNFFTGKDDHCFKKHQSDEGTNNEV
KNWVIEDSRQLVNKNQYQEKEPSQDIQQKPEQLPTNFVQSPIEEHLNENKNSISEQGSTY
KDEIMSPRRNIAGPEEKKFQMKENSISVDVKSQCRERTSVEKNRALQKDSYKGESNYRHR
SREHKNRRTHQHTREFEKSASCNYRNCSHKQDYYQDGRIDKYRRNNECPADRQNYSNSKA
NSLLAYHPYQDRFYREKYSSGSNGRTWSNQFEYNGLEHKYERKRKRSSSVNDGGDSERRC
KKLHRSPEERRMKKHKKSKKKRTSKDKHRSKNHRQQSFEASEASCDIDERKHRKKKKKKK
KKRHHSDKDCHYQKEHHHSRKHHSMKSPHASNKWERFNESTRGAYSEDKMINRHKQTVDD
QIPQKEKFAHLDSKLNGSYVHSKVSEEMLNEHNGSLNRHLLDYVGSGSLSDWSRQRLENG
SDSHKPYSKFDKEHLREKQYSHGYKECGPADNRNDLTSVSSFRDTTRWKTGEKRSEEQKA
H
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaaataggagctggcctccaaaatctgggcaacacctgcttcctaaactctgca
ctgcagtgtttgacttatacgccacctcttgcaaattacatgctttcccgggaacattct
agagcatgtaatgaacaaggattctgtatgatgtgtatgatgcagaatcatattacccag
gtcttttccagttctggaaatgtcatcaagcctgtgtctgtcattaacgacctccgacga
atagcaaaacattttcgatttggaaatcaggaagatgcacatgaattcttgcgttacact
gttgatgctctccagaaagcatgcctaaatggaagtaacaaattggatagacaaactcag
gccaccacaatgatatatcaaatttttggaggttacttgagatcgagagtaaagtgttta
aactgcaaaggagtttctgacacatatgacccatacttggatattgctctggaaataaag
actgcaccaaacatcacaaaagctctggaacaatttgtgaagcctgaacaattggatggt
gaaaatgcctacaaatgcacaaagtgtaagaaaatggtgccagcctcgaaaagattcaca
atccatcgagcttcaaatgtgctgacactctctctgaagcgctttgcaaactttacaggt
ggaaagatcacaaaggaagtgaggtactctgaatatttggatgttcgaccctatatgtca
cagaacaatggagaaccagttgtttatgtgttatatgcagtattggtgcattcaggattc
agctgccatgcagggcattactactgttatatcaaggctagtaatggacagtggtatcag
atgaatgattctgttgtatcttcaagtgacatcagatcagtgctaaaccaacaagcctac
gtgctcttttacatcagatctcacgatacaaaaaatagctcagaacattgtaatcatcca
ggccactcatctccaaggccatctgtcaatcaacgattgactaacaatcaaactgtatct
ggttttattggaccacagctccctccacacaggaccaagaactcaagccacttagcaaat
ggaaactgttctcaaaaagaagttcctggcagtgcagtacccagcacaagtggaatcagg
accatttctacttcccctggaccttctcagagtcggtcattgcccagaccaagtgtgata
cctgaatcttccaaaaggcaaaaactctccttcagtatacagccttccaagcaaggaaca
agacaagctccgacccagaccaacctgcattgtagtccattggagaacttgtacaaaact
ccttccattgtttcccatactaatgtgtctccatctacctcaggaacttcagccacagga
tccccaccctctgctccaactgctttagccattgtagctgctaagccaattgcatccaac
actgcctcttctcatttaatagtaaatggtcagcccaaaggatcatccagttctttggtc
ccttataatgaggagtcttcagaggactctgatgaggaacctaagagcttggttaaggaa
aatggttatgtgaaaagtataaatggtacacttaatggaactagacactgtacacatctc
aacataaactctttgtctacggccactagtgacaattgccattctgagaatctgtctgag
agagttacaactaaaactgatgtgcttaaggaagtgggcgattgtgacaagaatcatcaa
atctgtgaatccactgtttctcagatgcagtccctgaatcgttctgcaaatggattatct
actacaaaggaatcatctgcagataaagctagtactgttcctccaataccaaacactgaa
aagataacacagatctctacaagcagtataaagcacgagaaagcttcagaagaagtcagg
gaaaatcaaaaccaattgcttatgtcttctaaggccagttctgcaataaatcgtagtggt
ggtggtggtgatgcagacacggtacacacatacatggctgacaagcaagcaaatctactg
atctctcaactaaaaggagcaattgatgggccatccacattttccacagtcaatcctgtt
aaaaacaacattgaacttcagagaaatgttgctgaatgttgtcatgttaactgtagttcc
catgaccagtgtcctgtccacaaagtacatgcaattccagaaattactgaaatccaagaa
aaattgaggcctagtcagatcaaagaggaggcacagaaagttgaccacaagaccaatggt
catggttttgaaaataagcaatcaagtcaagatctaggcaacaagataccggaattggaa
attcacagtaataaacctcaatctaacagcaaccaggaaagtattttggaaaatgaaagt
cagcctagcacggaacactctagtaagggaaggactaatcaaaataaaaacttcttcacc
ggaaaggatgatcattgcttcaaaaaacatcagtctgatgaggggacaaataatgaagtc
aaaaattgggtaattgaggacagtcgtcaacttgtcaacaaaaatcaatatcaagagaag
gaaccaagtcaagacatacagcagaaaccagagcagctaccaactaattttgtgcaatct
cccattgaggaacatttgaatgaaaataagaatagcatttcagaacagggtagtacttat
aaagatgagattatgtcacccaggaggaatatagctggtccagaggaaaagaaatttcag
atgaaagaaaactccatttctgtcgatgtaaaatctcaatgtagagaaaggactagtgtg
gaaaagaatagagctttgcaaaaggatagttataagggtgagtccaattatagacacaga
tctagagaacacaaaaatagaagaacacatcaacacacaagggagtttgaaaaatcagca
agttgtaattacagaaattgttcccacaagcaagattattatcaagatggtcgaattgat
aaatatagaagaaataacgagtgtccagctgataggcaaaactacagtaattcaaaggca
aactcattgctagcttatcatccttatcaagatagattttacagagagaaatatagttct
ggctcaaatggaaggacttggagcaatcaatttgaatataatggactagaacacaaatat
gagcgtaaaagaaaacgcagtagcagtgtgaatgatggaggtgattctgaaaggagatgt
aaaaaactgcatcgatcacctgaggagaggagaatgaaaaagcataaaaaatcaaagaaa
aaaaggacatcaaaagacaaacacagaagtaaaaaccacaggcaacagtcttttgaagca
tctgaggcaagctgtgacattgatgaaagaaagcacaggaaaaagaaaaagaagaaaaaa
aagaaacgccatcacagtgacaaagactgccattatcagaaagaacatcatcattccagg
aaacaccatagcatgaaatcacctcatgccagtaacaaatgggaaaggttcaatgagtca
acccgaggtgcctattctgaagataagatgataaatagacataaacaaacagttgatgat
caaattccacagaaagaaaaatttgcacatttggacagtaagctaaatggctcctatgtc
cacagcaaagtttcagaggaaatgttgaacgagcataatggaagtttaaacagacatctt
ttggactatgttggatcaggatctctttctgactggtccaggcagaggttggaaaatgga
agtgattctcataaaccctattcaaaatttgataaagaacacttacgagaaaagcagtat
tcacatggctacaaagaatgtggtccagcggacaataggaacgatctgactagtgttagt
tcctttagggatactacaaggtggaagactggtgaaaagagatctgaagagcagaaagcc
cactga
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integrated database retrieval system
