Rhincodon typus (whale shark): 109913004
Help
Entry
109913004 CDS
T06055
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04510
Focal adhesion
rtp04512
ECM-receptor interaction
rtp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109913004 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109913004 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109913004 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109913004 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
rtp00536
]
109913004 (col4a5)
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109913004 (col4a5)
Glycosaminoglycan binding proteins [BR:
rtp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109913004 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109913004
NCBI-ProteinID:
XP_048461049
LinkDB
All DBs
Position
14:17904505..18137347
Genome browser
AA seq
1695 aa
AA seq
DB search
MRLEYSSIDQLSARIFLLLSALTVLVQNSEAAACHGCATASNCDCSGVKGEKGVRGLPGL
EGHMGLPGFPGPEGPPGPRGLKGDTGPPGLPGPKGIRGPPGLPGFPGTPGVPGLPGQDGP
PGPPGIPGCNGTKGERGFPGSSGFPGSQGRPGPPGLPGQKGEPGEVLSSQVFGYKGDPGL
PGVPGLPGPQGPVGAPGNPGPVGPSGQPGNPGPPGPPGPKGNMGLNFQGPKGEKGDPGLQ
GPPGPPGQLEQLNSPGVDFQKGEKGEMGPPGDPGERGFPGPAGPPGFGSKGEKGEPGDNG
KRGKPGKDGEPGGPGFDGLPGDPGQPGIPGRDGPKGQKGERGFSGPPGITFPRPGVTVGQ
KGDPGFPGSPGEKGDRGPPGLLGVQGPPGAPGLSSTGPPGTPGFPGERGQKGDEGVPGFA
LPGPQGAIGRPGPSGPPGPPGQPGRSVPGVGLQCQPGQPGLPGSPGATGFPGERGLKGDK
GDTCFNCFGTGNGATGLPGPPGPHGLPGQPGLPGMKGDRGLPGPIGTLGPPGSPGSPGIP
GARGPKGERGDGFGFPGPKGDRGSPGFPGPPGLPGLDGTPGRNGLPGPPGPKGLPGGLAV
KGSIGPPGDPGPIGFPGERGPPGPPGFGPPGYPGEKGAQGVSGRPGAPGAPGAKGDSGQT
VSEPGPRGPPGLPGEPGLAGRPGDPGQPGQPGLPGLQGPKGDRGVPGIGFPGPSGPKGLP
GLPGSPGAPGGPGRPGRDGTPGQPGIPGPKGDPGFGFPGPPGPPGPQGINGLPGPKGDPG
ITGLPGQPGRPGLDGTFGSKGDPGFTGPPGPPGPIGPPGLGGRGVPGPQGPPGLPGQPGQ
PGLPGRIGEKGDPGPPGLDIPGPPGEKGNTGFPGSPGPVGPPGIPGQPARDGLPGPPGPK
GEMGVMGTPGPPGSPGPPGAPGLLGPKGNEGIPGRPGNPGGPGFKGDKGDPGLPGVPGTI
DPGQIFAGQKGERGIPGSPGLPGAKGFTGLPGDPGAPGQDGLPGLPGGPGIKGDSGYPGQ
PGSPGLPGPKGSMGEMGLPGPPGSKGSLGSPGRPGQPGTPGGPGLKGEKGDSGIPELGSP
GPPGQKGEPGAPGFPGNPGSKGVPGGPGLPGLPGAPGPKGDSGQPGFPGTPGIPGPKGID
GFPGSPGLIGPPGPPGEPSPPGIPGPPGEKGQPGRDGIPGRAGLKGDPGAPGLGRPGAPG
SPGIPGPKGDPGVPGNPGGPGAPGLKGDPGFPGFTGQQGPPGPPGPPGRSLEGPKGSPGS
PGQPGRPGPPGPQGPQGPIGPRGPPGFGGIKGEKGNPGLPGSPGFPGPKGEIGPPGIAGS
PGQPGFTGLKGDPGSPGLPGFPGMKGSPGSPGAKGLPGDLGPPGPRGLPGPPGPQVPARI
VKGERGYPGPPGQPGTKGLPGPIGLPGPPGPAGPPGDPGQDGIPGFNGPSGLKGERGFPG
DPGDRGFSGPPGPDGTPGVPGLPGSPSVAHGFLVTRHSQSTDVPRCPPGTLTIYDGYSLL
YVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMA
PVNGENIRPFISRCSVCEAPALVIAIHSQTIQIPQCPEGWSSLWIGYSFMMHTSAGAEGS
GQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVETVEMFSKPQPETLKAGE
LRTRVSRCQVCMKRT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttgaatattcctccatcgaccaacttagtgctcggatatttttgctgctatcg
gcgctaacagttttggtgcagaactccgaggcagcggcttgtcatgggtgtgcaacggcc
tcaaattgtgactgtagtggagtgaaaggtgaaaagggtgtgaggggtctgccaggactg
gagggtcacatgggtttacctggtttcccagggccggaggggccacctggaccaagaggt
ctaaagggtgacactggaccacctgggttaccaggacctaaaggaataagaggacctcca
ggtcttccaggctttcccggaacccctggtgttccagggttaccaggtcaggatggtcct
ccgggtcctccaggcatcccaggttgcaacggaacaaagggcgaacgaggatttccaggt
agttctggctttcctgggtcacagggccgtccaggtccccctgggcttccaggccaaaag
ggtgaaccaggtgaggtgctgtcatcgcaggtttttgggtacaaaggagatccaggattg
cccggtgtccctggtttaccgggtccccagggcccagtgggagctccaggtaatcctggt
cctgttggtccatcaggtcagccgggtaatccgggccctcctggtccacctggtccaaag
gggaacatgggcttgaatttccaaggacctaaaggggagaagggtgatccaggtcttcaa
ggtcccccaggtcccccgggtcagttggaacagctgaattcccctggcgtcgacttccag
aaaggagaaaagggtgagatgggaccacctggtgatcctggggagaggggctttcctggc
cctgcaggccctcctggctttggcagcaaaggcgagaagggtgagccaggagataacgga
aagagaggtaaaccaggaaaagatggagagccaggtggccctggatttgatggtctccca
ggggatccaggtcaaccaggaattccaggtagagatggacctaagggtcagaaaggagaa
cgaggtttctctggtcctccaggcattacatttccacgaccaggtgttacagttggacaa
aaaggtgatccaggttttccaggctctcctggagaaaaaggagatcgaggtcccccagga
cttctaggagtacaaggaccaccaggtgctccaggtctgtccagtacgggaccaccaggc
accccgggtttcccaggcgaaagaggtcagaaaggggacgaaggcgttcctggatttgca
ctgccaggtccgcaaggagcaattggtcgcccaggccccagtggtcctccaggccctcct
ggtcaaccagggcgttcagttcctggtgttgggttgcaatgtcagccagggcagccagga
ttaccagggtcaccaggagcaaccggcttcccaggagagagaggactgaaaggggataag
ggagacacatgctttaactgttttggtactggcaatggagctactggtctaccaggacct
cctggaccacatggacttccaggtcaaccaggattgccaggaatgaaaggagatcgtgga
ctacctggtccgattggaactttgggaccgcctggttcgccaggctctcctggtattcca
ggagcccgtggcccgaaaggtgaacgtggagatggctttggctttccaggcccaaaaggt
gatcgagggagccctggtttcccaggacctccaggacttccaggattagatggcacccca
ggaagaaatggtctgcctggaccacctggtcctaaaggattacctggcggcttggccgtc
aaaggatcaatcggaccccctggagatccaggccccatcggatttccaggagagagaggt
cccccgggaccaccaggatttggtccaccaggttatccaggggagaaaggtgctcagggt
gtatcaggccgtcccggagcccctggagctccaggtgctaaaggtgattctggtcaaaca
gtctctgagcctggtccaagaggtccccccgggctcccgggtgaacctgggctggcaggt
cgtccaggtgacccaggccaaccagggcagcctggtttacccggactgcaaggaccaaaa
ggggataggggagtgccaggcattggattccctggtccatcaggcccaaaaggtttgcca
ggattaccaggttcaccaggtgctccaggaggtccaggaagaccaggccgtgatgggact
ccaggtcaaccaggaatcccaggaccaaagggagatcctggctttgggtttccaggacca
ccgggtccacctggtccacaggggatcaatgggctgccaggtcctaaaggtgatccagga
attactggattaccaggccaaccagggcgaccaggattagatggcacattcggatcgaaa
ggtgatccaggttttactggccctccaggtcctcctggtccaataggaccccctggatta
ggtggacgaggcgtcccaggtccacaaggcccacctgggcttccaggtcaaccaggtcaa
ccaggattgccaggtcgcattggtgaaaagggagatcctggtcctccagggttagatatc
cctggccctcctggtgagaaaggaaatacaggattcccaggcagtccaggtccagttggc
cctccaggaatacctggtcaaccagcaagggatgggttaccaggtccaccaggtcctaaa
ggtgaaatgggtgtgatgggaacgccaggtcctccgggttctcctggtcctccaggtgct
ccaggtttgctcggtccaaaaggtaatgagggcatcccaggtagacctggaaacccaggc
ggacctggctttaaaggtgacaaaggtgaccctggcctcccaggtgtcccaggaacaatc
gacccgggccagatctttgcaggacagaaaggagagcggggtatcccaggttcaccaggt
cttccaggcgcaaagggtttcacaggattacctggtgatccaggagcaccaggacaagat
ggtttaccaggattgccaggaggtccaggaatcaaaggagactcagggtacccaggacaa
ccaggatctccgggactaccaggaccaaaaggatcaatgggtgaaatgggtcttccaggt
ccaccaggtagtaaaggttctctgggaagtcctggtcgtccaggtcagccaggtactcca
ggtggtccaggcttaaagggtgaaaaaggtgactcaggtattccagaactagggtcccca
ggcccccctggtcaaaagggtgaaccaggtgctcctggtttcccaggtaaccctggaagt
aagggtgttccaggtggccctggtcttcctggattgcctggtgcacctggtcctaaaggt
gattctggccaaccaggattcccaggtacacctggaattcctggtcccaagggaattgat
ggcttcccaggttctcctggccttattggaccacctggtccaccaggtgagccaagtcct
cctggaattccaggtcctccaggagagaaaggacaaccaggccgtgatggtattccaggc
cgagctggtctgaagggagatccaggtgctccaggcctaggacgcccaggagcccctggt
tctccaggaattccaggaccaaaaggagatccgggtgttccaggtaatccaggaggtcca
ggagctccaggtcttaaaggtgatcctggattcccaggattcacaggtcagcaaggccca
ccaggtccccctggcccaccaggacgatcattggagggcccaaaaggttcacccgggtct
ccaggacagcctggaagaccaggtcctccaggtcctcaaggtccacaaggtccaataggt
ccccgaggcccaccaggatttggcggtatcaaaggagaaaaaggcaatcctggtcttcca
ggatcaccagggttccctggtccaaaaggggaaattggaccaccaggaattgcaggtagc
ccaggacaaccaggcttcacaggactgaaaggcgacccaggttcaccaggcctgccaggc
tttccaggaatgaaaggatctcctggatctcccggtgctaagggtttgccaggtgattta
ggcccacctggccctcgaggtctacctggtccacctggaccacaagtaccagctcgaatt
gtcaaaggagaacggggttacccaggaccaccaggtcagcctggcactaaaggattacct
ggtccaattggtctgccagggcctccaggtccagcaggaccccctggtgacccaggtcaa
gatggtattcctgggtttaatggaccaagtggattaaagggtgaaagaggctttccaggg
gatccgggtgacagaggtttttcaggcccacctggtccagatggtactcctggagtgcca
ggccttcctggatctccttctgtagctcatggattcttggttacccgacacagtcagtca
acagatgtgccacgttgtcctcctggaacattaaccatctatgatgggtactctctgctt
tatgtacaagggaatgaaagagcacatggtcaagatttgggaactgctgggagctgtctg
cggcgtttcagtacaatgccatttatgttctgtaacatcaacaacgtctgtaactttgcc
tcaaggaatgactactcctattggctctcaacgcctcagccaatgccaatgagcatggcc
ccagtaaatggggagaacatccgacccttcattagcaggtgcagtgtatgtgaagcccca
gcattagtaatagccattcacagtcagactattcagatcccacaatgtccggagggatgg
agctcactgtggattggatactctttcatgatgcacaccagtgctggtgctgaaggatca
ggccaagctttagcttctcctggttcctgcctggaggaattccgatctgcaccattcatc
gaatgccacggtcgaggcacgtgcaactattatgccaactcgtacagtttctggctagcc
acagttgaaacagtggagatgttcagtaaaccgcagcctgagactctaaaagcgggtgaa
ctccgaacacgtgtgagccgctgtcaagtatgtatgaaaaggacgtaa
DBGET
integrated database retrieval system
