Rhincodon typus (whale shark): 109913390
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Entry
109913390 CDS
T06055
Name
(RefSeq) transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109913390
03036 Chromosome and associated proteins [BR:
rtp03036
]
109913390
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109913390
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
109913390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
Zf-C2H2_ZNF451_C
Piwi_N
zf-C2HE
zf-C2H2_6
zf-met
C2HC_ASCIZ
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
109913390
NCBI-ProteinID:
XP_048464319
LinkDB
All DBs
Position
19:complement(55458205..55550209)
Genome browser
AA seq
583 aa
AA seq
DB search
MTESEIFPHDTTVFLAKSYEDIMEYAVERGVSDKMRIITLQVVNMDEHIQPSLTEVNLTM
NQQGTEMIPNGLRQALGGEGEIMHTLPLPEGVQVFKVGPNGEMQCIERMELDAAHTPEEC
VDTVIDQYHEPLVKKEKSSVQCGIQIENNTDVTIHHCRGRQLEGLQPDVSVEKTISPARL
NKIKKKDVKKTFQCKLCSYTFTQRSNLDRHMRSHSDERPHKCHLCEKAFRTITLLQNHIN
THTGTRPHKCPDCAMAFVTSGEVVRHRRYKHTHEKPFKCSICDYASVEVSKLKRHIRSHT
GERPFPCTFCSYASRDTYKLKRHMRTHSGVHLRKQHSYTSSSMKCRYCEATFHERYALIQ
HQKTHRNEKRFKCDQCDYACKQKRHMIMHKRIHTGEKPFSCSQCDKQFRQKQLLDLHFKK
HHDPSFIPEAYICSQCCKSFTRKNVMKRHAERCGNVTIQDGSAMFMPKKRRIKKNKLEYK
HNAEAKGDEPPVGLETQQSIEVTDDCHIKNDVTSPTKTNVIKRKKMVKGKSAGVKLEPQE
FAGSVSNHTVEIIPVDSNKELTTVNGQCKKTITPEMILKRMVL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaagtgaaatttttccccacgatacaactgtgtttttggcaaagtcatacgaa
gacatcatggaatatgctgtggagcggggagtttctgacaaaatgcgcattatcacatta
caagtagtcaacatggatgaacacatccagcccagcctgactgaggtcaacttgacaatg
aaccaacaaggaactgaaatgattccaaatgggctgagacaggcgttgggtggtgagggt
gagatcatgcacactcttccactccctgaaggagtacaagtttttaaggtagggccaaat
ggagagatgcagtgcattgagagaatggaactggatgcagcccatactccggaagaatgc
gtagacacagtgatagaccaataccacgaacctcttgtcaagaaagagaaaagtagtgtg
cagtgtggtatacaaattgagaataatacagatgtgaccattcatcattgtagaggcaga
cagctggagggtctacaaccagatgtatctgttgaaaaaactattagtcctgctagactt
aacaaaattaagaagaaagatgttaagaagacatttcagtgtaaactatgttcttataca
tttacacaacggtctaatctagaccgtcacatgagaagccattcagatgagcggccacac
aaatgtcacctttgtgaaaaggcttttcgaaccatcacccttctgcaaaaccatataaac
actcatacaggcactagaccacataaatgccctgactgtgctatggcatttgttacgagc
ggtgaggtggtgcgacacagacgttacaagcatacccatgaaaagcccttcaaatgttca
atctgcgattatgctagtgttgaggtaagtaaactgaagcgacacatccgttctcacaca
ggggagcgtccattcccgtgcacattctgcagctatgctagcagagatacatacaagctg
aagcgacatatgagaactcactcaggtgtccatttacgaaagcagcattcctacacaagc
tcgagcatgaagtgtcgttactgtgaagctactttccatgaacgctatgcactcatccaa
caccaaaagacgcacaggaatgagaaacgtttcaagtgtgaccagtgtgattatgcatgt
aaacagaaacgtcacatgataatgcataaacgtatccacaccggagaaaagccattcagc
tgctcccagtgtgataagcagttcagacagaagcagcttctggacttgcatttcaagaag
catcacgatccaagtttcatcccagaggcatacatttgctcccagtgttgtaagagcttt
actcgcaagaatgtcatgaaaaggcatgctgagagatgtggcaatgtgacaatacaagat
ggaagtgcaatgtttatgccaaagaaaaggaggatcaagaagaataaattggagtacaaa
cacaatgctgaagcaaaaggagatgaacctccagttggacttgagactcaacaatccatt
gaagtaactgatgactgtcacatcaagaatgatgtcacatcaccgactaaaacaaatgtg
attaaaaggaaaaaaatggttaaaggaaaatcagctggagtgaagttggagccacaggag
tttgcaggcagtgtttctaaccacacagttgagatcataccagttgacagcaacaaagag
ctaaccacagtgaatggtcagtgcaaaaaaacaatcacccctgagatgatcctgaaacga
atggtcttgtaa
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