Rhincodon typus (whale shark): 109913748
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Entry
109913748 CDS
T06055
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp02010
ABC transporters
rtp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109913748
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109913748
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rtp02000
]
109913748
Transporters [BR:
rtp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109913748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
109913748
NCBI-ProteinID:
XP_048451295
LinkDB
All DBs
Position
3:complement(33270735..33358543)
Genome browser
AA seq
2102 aa
AA seq
DB search
MSFDHDTVEQILDANVDFGKVITEGQGLRLKDLCNGPKLKDFVIIGDRSTAIHAQSLICT
LSDAELKKVELTFFSNLDILKLMQKGLITNPKEALEVTEALDDVMQNLMILAKELMEVKS
WTDMRREVMLLSNDSMSGSPQELYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKYLLGRN
GTDDDITHYDNSTTPYCNDLMRNLESNPISKMIWRAMKPLLVGKVLYTPDTPVTRRIVQE
VNETFQELSIFREIGELWKEVGPKIWEFMERSQAMDLIRSLLKKHVTAKYVDSKLEGTSW
TAADLSKFLAKYPEEVQHPNRSTYTWREVYNETEQAIHTISLAMECVKWDKLEAVSTEEK
LINKSMELLDERKFWAGIVFLDFDSNSTKPSEHVKYKIRMDIDNVERTNKIMDGYWDPGP
RADPFEDLRYIWGGFSYLQDILEHAIIRTVTGRKEKTGVYIQQMPYPCYVDDLFLRVLSQ
SLPLFTTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLSSGTLWLSWFISSLIPLLISAA
LLVIVLKEGNILPYSNPIAVFTFLAVFGVVTILQCFLISTMFSKANLAAACGGIIYFTLY
LPYVLCMAWQEYTTYSVKIIASLLSPVAFGFGFDYFAQFEEQGIGVQWHNLFSSPSKGDE
YNITTSIILMIIDTFLYGVLTWYIEAVFPGQYGIPKPWYFPFTKSYWCGDTVQNIKQTPS
AKNANSQICVEEEPSHLKLGVSIQNLVKIYRNGKKLAVDGLSLSFYEGQITSFLGHNGAG
KTTTMSILTGLFPPTSGTAYILGKDICSDLDSIRQSLGVCPQHNVLFDMLTVEEHVWFYA
RLKGLSRSEVKTEVEQMVLDVGLPNKRKETTNKLSGGMQRKLSVALAFVGGSKVVILDEP
TAGVDPYSRRGIWDLLLKYRQGRTIILSTHHMDEADMLGDRIAIISNGKLCCCGSSLYLK
NQLGTGYYLTLVKKDLEPSLSSCRNSSSTMSYLKKEDSVSQSSSDAGLGSDQESDTITID
VSAISNLILKHIPKARLVEDIGHELTYVLPYEAAKDGAFVELFHEIDDRLSDLGISSYGI
SDTTLEEIFLKVAEDNGVDAETSDGMIPACRNRRSRFVDRQSCLRPFTDDAADVNDSDGD
PEARETDFLSGMDGKGSYSVRGWNLFRQQFVALFSKRLIYAKRSRKGIFAQIVLPAVFVC
IALVFSLIVPPFGKYPSLELHPWMYDEQYTFISNDAPGNKNTEKLLDSLVNKPGFGTRCM
KGNPILDNPCEPAAGEWMTPSVSDSVMDVFLKGNWTMDNPSPSCRCSDNTIKKMLPDCPA
AAGGLPPPQIKLNSTDILQNLSGRNVSDYLVKTYAQIIGRSLKNKMWVNEFRYGGFSLGG
ESSQLLLPQEEITQAVLHLKEALALTQGSASDRFMSQLLKFMSGLDTKDNVKIWFNNKGW
HAIGAFLNVMNNAILRNRLGEGEDPSAYGITAINHPLNLTKEQISEVALMTTSVDVLVSI
CVTFAMSFVPASFVVFLIQERVTKAKHMQFISGVKPAMYWLANYVWDMCNYVVPATLVII
IFICFQQKSYVSSSNLPVLALLLFLYGWSITPLMYPASFVFRIPSTAYVILTSVNLFIGI
NGSVATFVLELISNNKLNSINEVLKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENR
FVSPLSWDLVGRNLFAMAVEGVVFFFITVLIQYRFFIKPRHTSVKLPVLTDEDEDVAKER
QRVLSGGCQNDILELKSLTKIYRMKRKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKML
TGDSYVTGGEAFLNGYSILSNIQEVHQNMGYCPQFDAINELLTGREHLELYGLLRGIPEK
EICKVAEWGIQKLGIIRYADKRAGNYSGGNKRKLSTAMALLGGPPVLFLDEPTTGMDPKA
RRFLWNTILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGKFRCLGSVQHLKNRFGDGY
TIIVRIAGPNPDLSPVEQFFKRAFPGSILKEKHRNMLQYQLPSYQSSLSRIFSILSSNKE
KLQIEDYSVSQTTLDQVFVNFAKDQSDDDLSKDTSVQRNETVLDVALLNTFLHDNSMKES
CV
NT seq
6309 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaccatgatacagtggaacagatcctggatgctaatgtagattttggaaag
gtcattacagaggggcaaggattacggctgaaggacctttgcaatggcccaaaactcaag
gacttcgttattattggagatcgctccacagccattcacgctcaatctcttatttgtacc
ttatctgatgcggaacttaaaaaagtcgaactaacattcttttccaacctggatatttta
aagttaatgcaaaaaggattgatcactaatcctaaagaagcattggaagtaactgaagcc
ttggatgacgttatgcaaaatctcatgattctagccaaagagctaatggaagtgaagagt
tggactgacatgcgaagagaggtaatgttactgtccaatgacagtatgtcagggtcaccc
caagagctgtaccaggccgtgtcgagaattgtgtgtggtcatcccgaaggcggtggatta
aaaattaaatccctgaattggtatgaggataacaactacaagtatcttttgggtagaaat
ggcacggatgacgatataacacactatgacaactcaacaacaccgtactgcaatgacctg
atgaggaacttggaatccaatcccatctctaaaatgatctggagggctatgaaaccgttg
ctggttggtaaagtgctgtacactcctgatacccctgtgactcgaagaattgttcaggag
gttaatgaaacctttcaagagttgagtatcttcagagagattggagagttgtggaaagag
gttggaccaaagatctgggaatttatggaaagaagtcaggcaatggatttgattcgaagc
ctactaaagaagcatgttacagcaaagtatgttgattcaaagttagaaggaacctcttgg
acagccgctgacctctccaagtttcttgctaaatatccagaagaggttcaacatccaaac
aggtctacgtacacctggagagaggtttacaatgagactgaacaggcgattcacacaatt
tcactcgctatggagtgcgtaaagtgggataaattagaagctgtgtccactgaggagaaa
ctgataaataaatcaatggagctgctggatgaaaggaaattctgggcaggaattgtcttt
ctggactttgattcaaacagtacgaaaccatcagagcatgtcaagtacaaaattcggatg
gacatagacaacgtggagagaacaaacaagatcatggacgggtattgggatcctggtcct
cgtgctgacccatttgaagacctccgttatatttggggtggtttctcgtacctccaggat
atactagagcatgcaatcatccgcactgtaactgggaggaaagagaaaactggcgtgtac
attcaacaaatgccgtacccctgctacgtggatgacctgtttcttcgcgttctgagccag
tcactacctcttttcaccactctggcctggatctactctgttgctgtgataattaaaggg
atagtgtatgagaaagaagcacgtctcaaggagaccatgaggattatgggtctgagtagt
ggcacgctgtggctcagctggttcatcagcagtttaatccctcttctcatcagtgctgcc
ttgctggtgatagttctaaaggaagggaacatattgccatacagcaaccccattgctgtc
ttcacattccttgctgtttttggtgtggtcaccatcttacaatgctttttgatcagcacc
atgttctcaaaggctaacctggcagcagcctgtggagggatcatctactttaccctgtac
cttccttacgtgctctgtatggcttggcaggagtatacaacctactcagtcaaaatcatt
gctagcttgctctctccagtcgcctttggctttggttttgactactttgcccagttcgaa
gagcagggaattggagtccagtggcataacctcttctcgagtccgtcgaaaggtgatgag
tacaacatcaccacatccatcatccttatgatcattgacacatttctctatggagttctg
acttggtacattgaggcagtttttccaggtcaatatggcattccgaagccatggtatttt
cctttcaccaaatcctattggtgtggagacacagttcagaacattaagcagactccatct
gctaagaatgcaaattcacagatctgcgtggaagaggagccaagtcacctcaaacttggt
gtctctattcaaaacctggtcaagatttaccgcaatggcaagaagctggcggtcgatgga
ctcagtctcagcttttatgaagggcagatcacatctttcctaggacataatggagctggc
aaaaccacgactatgtcaatattgacaggattgtttccaccgacttctgggaccgcttat
attctgggaaaagatatctgttccgaccttgactccattcggcaaagcctgggtgtgtgc
ccacagcacaatgtcctttttgatatgcttactgtggaggaacatgtctggttttacgca
cgactaaagggattgtcaaggagtgaggtgaagacagaggtggaacaaatggtcttggat
gtggggctgcccaacaaacgtaaagaaacaaccaacaagctttcaggtggaatgcaacgt
aaactttcagtggcccttgcatttgttggtggctcaaaagttgtcatcttggatgaacca
actgctggagttgacccttattctcgccgagggatatgggatttgctgctgaaatatcgg
caaggtcggacgattatcctctctacacatcatatggatgaggcggacatgctgggagac
cggattgccattatttctaatggcaagctatgctgttgtggatcatcactgtacctaaag
aaccagttaggcacaggttactatctcactctggtcaagaaagatttggagccatctctc
agttcctgtagaaacagcagcagtaccatgtcctacttaaaaaaggaggacagtgtttct
caaagcagctctgatgctgggcttggcagtgatcaagaaagtgataccatcacaatagat
gtttcggccatttccaatctcatcttgaaacacattccaaaggctcgcttggttgaagat
attggccatgaattgacctatgtgctgccttatgaggcagctaaagatggggcttttgtg
gaactttttcatgagattgatgacaggctctctgaccttggaatttccagttatggaatc
tctgacaccaccctggaagaaattttccttaaggttgctgaggataatggagtggatgct
gaaacctcagatggcatgattccagcttgccgaaaccgtagatcgagatttgtggacagg
cagagttgcttgagaccgtttactgatgatgccgctgatgttaatgactcagatggtgat
cccgaggcacgcgaaacggactttctgagtggaatggacgggaaaggctcttactcagta
agaggctggaatctatttcggcagcaatttgtggcactattttcgaagaggctgatttat
gcaaaacgcagcaggaaaggaatttttgctcagattgtgctgcctgctgtgtttgtgtgt
attgcactggtgttcagtctgattgtgcctccatttggaaaatatcccagtttagaactg
cacccctggatgtatgacgagcagtatactttcattagtaatgatgcccctggaaacaag
aacacagaaaaactgcttgactctcttgttaataaaccagggtttggcacacggtgtatg
aaaggaaaccccattctagataatccctgtgagcctgcagctggggaatggatgacgcca
tctgtttcggattctgtcatggatgtctttctcaaagggaattggacaatggataatcct
tcaccatcctgtcggtgtagtgataacactataaagaagatgctccctgactgccctgca
gctgctggtggacttccgcctcctcagattaagttgaattctacagacatcctccagaac
ctgtcaggcagaaatgtgtccgattaccttgtgaaaacctatgcacaaatcattgggcga
agtttaaagaacaaaatgtgggtgaatgaattcaggtatggaggattttcacttggggga
gaaagctctcagttgctgctaccacaggaagaaatcactcaagccgtactccatttaaaa
gaggcacttgcattgacacagggaagtgcttctgaccgctttatgagccagctcttgaaa
tttatgtcaggattagacactaaagataatgtaaagatttggttcaacaacaaaggctgg
catgccatcggagcctttctgaatgtcatgaacaatgctattcttcggaatcggttaggg
gaaggtgaagatcccagtgcatatggaatcaccgccatcaatcatcctctcaatctgacc
aaagagcagatctctgaggtggctctgatgaccacttccgtggacgttctggtttccatc
tgtgtgacctttgccatgtcctttgtgccggcaagtttcgttgttttcctgattcaggag
cgggtcaccaaagccaagcatatgcagttcatcagcggagtgaaaccagccatgtattgg
ctagctaactacgtatgggatatgtgcaactatgtggttcctgccactctggtcattatt
attttcatctgtttccaacaaaagtcatatgtgtcttcctcgaatttgcctgtgttggct
ctgcttctcttcctctatgggtggtccatcacacctttgatgtacccagcgtcatttgtg
ttcaggatccccagcactgcctatgtgatactaaccagtgtgaatttgttcattggtatt
aatggcagcgtggcaacctttgtattggagctgattagcaacaataaactgaacagcatt
aatgaagtcctgaaatctgtattcctcatctttccccacttctgtttgggccgcgggttg
attgacatggtgaaaaatcaggccatggcagatgccttagagcgatttggcgagaatcgt
tttgtctccccgctttcctgggatctggtaggaaggaacctgtttgctatggctgtggaa
ggagtggttttcttcttcatcactgtcctgattcagtacagattctttataaaaccaaga
cacacatctgtaaaacttccagtactaactgatgaagatgaggatgtcgccaaggaaagg
cagagggtcttgagcggtggatgtcaaaatgacattctggaactgaaaagtctgacaaaa
atttacaggatgaaacggaaacctgctgtggacagactttgtgttgggatcccaccagga
gagtgttttgggcttctcggggtgaatggtgctgggaaaacaaccaccttcaaaatgttg
actggagatagttatgtgacaggaggagaagctttccttaatggctacagcattttatcc
aacatacaagaggtccaccagaacatgggttactgtcctcagtttgatgccattaacgag
cttctcactggccgggaacatctggagctgtatggactcctgcgtggaattcctgagaaa
gagatctgcaaggttgctgaatggggaatccaaaagctgggaattattcgatatgcagat
aaaagggctggaaactacagtggtgggaacaaacgcaaactctccaccgctatggctctg
cttgggggtcctcctgtgctatttctggatgaacccacaacagggatggacccgaaggct
cggagatttctgtggaacacaattcttagtattgtaaaagaagggagatcagtggtcttg
acgtcacatagcatggaagaatgtgaagctctgtgcactcgaatggccataatggtaaat
ggcaaatttcgatgtctgggcagtgtgcagcacctcaaaaacagatttggagatgggtat
acgataattgtgaggatagctggtccaaacccagacctgagccctgtggagcagttcttt
aagcgggcttttcctggcagcattctcaaggagaagcaccgcaacatgctgcagtatcag
ctgccatcctatcaatcctccttatcaaggatcttcagtattctctccagcaacaaggag
aagcttcaaattgaagactactctgtttcacaaaccacactagaccaagtttttgtaaat
tttgccaaggaccaaagtgatgatgatctctcgaaggacacgtcagttcagagaaatgaa
actgtcttagatgttgcactcctgaatacatttttacatgacaacagtatgaaggaaagc
tgtgtgtga
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