Rhincodon typus (whale shark): 109913893
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Entry
109913893 CDS
T06055
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM50
KO
K12024
tripartite motif-containing protein 50/73/74
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109913893
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109913893
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPRY
zf-RING_UBOX
PRY
zf-B_box
zf-C3HC4_4
zf-C3HC4
TRIM_CC
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-RING_2
U-box
RING_XB3-XBAT31
ATG17_like
zf-RING_6
Prok-RING_4
zf-Nse
Bro-N
Motif
Other DBs
NCBI-GeneID:
109913893
NCBI-ProteinID:
XP_048468620
LinkDB
All DBs
Position
26:35903353..35941690
Genome browser
AA seq
474 aa
AA seq
DB search
MAARQNFQCLEDHLLCPICLEIFKQPLMLQCGHSYCKNCIHSLSGNLASCFTCPVCRKAV
DSRSSSPNVSLARVIDTLMVINGSSGDQENCRDHHNPLSLYCEKDQQIICGLCGIIGQHK
QHKITPLSSVYERMKEQLALLITGVQTQKNSVEGQMNKLIHNKTRIINESDVFKLVIQKE
FQELRSFVDDEEANIIETVQLKCTSAVESIDEQLAEMSKSLKQFAEVEASLKKLSNENHL
DFIQKYSSIVSSCELATQPQSDKAFSTISFKPGFRDDDIKLTVWKKLQKRILPEPEELKL
DPSTAHPLLIITNGSTRVECGTYLKRLSLVQERFDYNTCILANKGFSSGKHYWQVIVNEK
MKWRLGVIKGTTGRKGKLNKTPENGVWMIGVKEGKIYEAYKNPKVQLTLFVRPRKIGIFL
DYEGKRLSFYNVDNPDELSLIYTFDADFQGKIYPIFDLCCVDRSDLAPITLCRV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaggcagaattttcagtgcctggaggaccatctcctgtgtcccatttgtctg
gagatcttcaagcagcccttaatgctgcaatgtggtcacagctactgtaagaactgcatc
cactccctttctggaaatctggccagttgtttcacttgccctgtatgtcgaaaggcagtg
gacagcagaagctcttctcccaatgtctctctggctcgtgtcatcgacaccctgatggta
ataaatgggtccagtggtgaccaggaaaactgcagggatcatcacaacccgctgagcctg
tactgtgagaaggaccagcaaataatatgtgggctctgtggaatcatcggacaacacaag
caacataaaataacaccactctcgagtgtgtatgagagaatgaaggaacaactggctttg
ctcataacaggagttcagacacaaaagaacagcgtggaggggcaaatgaacaagctgata
cacaacaagacccgtatcattaatgaatctgacgtctttaagttggtgattcagaaggaa
ttccaggaactcaggagttttgttgatgatgaagaggccaacatcattgagaccgtacag
ttaaaatgtacttctgccgttgaatcaattgatgaacaattggcagagatgtccaaatct
ttaaaacagtttgctgaagttgaggcttcattgaagaaattgagcaatgaaaatcactta
gatttcatccaaaagtacagttcaattgtctcaagttgcgaactggcgacacagccacag
tcggacaaagccttcagcaccatctccttcaaacctggctttagagatgatgatatcaaa
ctgacagtctggaaaaaactgcaaaagagaattttaccagaaccagaggaattaaaattg
gatcccagcaccgcacatccacttctgatcataaccaacggtagcaccagggtagaatgt
ggaacgtacctcaagcgcttgtcattagtacaggagcgatttgactacaatacctgcatc
ctcgccaacaaaggcttttcctcaggcaagcactactggcaagtgattgtcaacgagaag
atgaagtggcgtctcggtgtcatcaaaggaactacagggcgcaaaggaaaactgaacaag
actcctgagaatggagtctggatgattggagtgaaggaaggaaagatttatgaggcatac
aagaaccccaaagtccaacttacactctttgtgaggccacggaaaattggcatcttcctg
gattatgagggaaagcgtctctccttctacaatgtagataatcctgatgagctgagtttg
atctacacatttgatgcagactttcaagggaagatttatccaatttttgacctttgctgc
gtggacagaagtgacttagcccctatcacgctttgtcgtgtataa
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