Rhincodon typus (whale shark): 109914282
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Entry
109914282 CDS
T06055
Symbol
atg4c
Name
(RefSeq) cysteine protease ATG4C isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04136
Autophagy - other
rtp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109914282 (atg4c)
04136 Autophagy - other
109914282 (atg4c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtp01002
]
109914282 (atg4c)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109914282 (atg4c)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109914282 (atg4c)
Peptidases and inhibitors [BR:
rtp01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
109914282 (atg4c)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
109914282 (atg4c)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109914282 (atg4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
109914282
NCBI-ProteinID:
XP_020369466
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All DBs
Position
10:28892026..28937945
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AA seq
473 aa
AA seq
DB search
MEETEPDEVDKLKAKFMSAWHNMKYSWVVRTKTNFSRNSPVFLLGKCYHFKSEGVVESAS
GCRDAATDSEMVLCNVNQFRKDFITRIWLTYRREFPQLKGCTLTTDCGWGCTLRSGQMLL
AQSFLLHFLGRDWLWPDALQMVALETELFKAKPPTMNDDVADFTFLPPLESPLQDMSEQL
GLSSNEKQTLKLNPGNTANEDEKFHRKIISWLADIPAATFGMHKLIELGENSGKRAGDWY
GPAVVAHILRRAVEDAVEPELQGITVYVAQDCTVYIADVIEKHLQVIESGVPKSSDKTAV
VILIPVRLGGEKVNLEYKEIVKGILSLEFCVGIIGGKPKQSFYFVGFQDDSLIYMDPHYC
QSFVDVTTKDFPLESYHCPSPKKMSFSKMDPSCTIGFYSHSEADLEKIIDEVTKVLNSPS
SKEKYPLFTFSSGHARDFDIDKLCMPKTDSAAQLSEIPRRKAEKLSNEEFVLL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaccgaacctgatgaagtggataaactgaaggcgaagtttatgtcagcatgg
cacaatatgaagtacagctgggttgtgagaaccaaaacaaattttagcagaaattcgcct
gtctttttgctgggaaaatgctatcatttcaagtcagagggagtggttgaaagtgcatca
ggttgcagagatgcagctacagactcagaaatggttttgtgtaatgtgaatcaattccgt
aaagacttcatcactagaatctggctaacgtatcgccgtgagttcccgcaattaaaaggg
tgtacacttacaacagactgtggctggggctgcacactgagatctggtcaaatgctgttg
gcccaaagctttctgctccattttcttggacgagattggctctggccagatgcacttcag
atggttgccttagaaactgagctattcaaagccaagccaccaacaatgaatgatgatgtt
gcagattttaccttcctgccacctttagaaagtccactacaggatatgagtgaacagctg
ggcttatcaagtaatgagaaacaaacactaaagttaaatcctggtaatacagcaaatgag
gatgagaagttccatcggaaaataatttcctggttagcagacatcccagcagctaccttt
ggaatgcataaactgatagagttgggagaaaattctggcaagcgagctggggattggtat
ggcccagctgttgttgcccacattttaaggagagcagtggaagatgcagtggagcccgag
ctgcaaggaataacagtttatgttgctcaggactgtacagtttatattgctgatgtaata
gaaaaacacttacaagttattgaatcaggagtaccaaaatcatcagacaagacggctgtt
gttatcctaataccagtgagacttggaggggaaaaggtcaaccttgagtacaaagagatt
gtaaaggggatcttgagtcttgagttctgcgttggaattattggtggaaagccaaaacaa
tctttctattttgtgggatttcaagatgacagtttgatttacatggatcctcattactgc
cagtcatttgtggatgtcacaacgaaggatttcccgcttgagtcatatcactgtccttct
ccgaaaaagatgtcatttagtaagatggatcccagctgcacaatagggttttactcacac
agtgaagctgatcttgaaaaaataattgatgaagtaacaaaggttctgaattcaccgtct
tccaaggagaagtacccattgtttactttttcaagtggacatgctagagattttgatatt
gataaactttgcatgccaaaaactgattcggctgcacaactctcggagattccaaggcga
aaagcagagaaattgagtaatgaggagtttgtcttgctgtaa
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