Rhincodon typus (whale shark): 109914506
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Entry
109914506 CDS
T06055
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109914506 (scaf8)
03041 Spliceosome [BR:
rtp03041
]
109914506 (scaf8)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109914506 (scaf8)
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
109914506 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109914506
NCBI-ProteinID:
XP_048456931
LinkDB
All DBs
Position
9:complement(34875576..34937606)
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AA seq
1127 aa
AA seq
DB search
MELNLDKCEVMHLSKTTKLVVHLYLNVYPQCKPEYKVPGLYVIDSIVRQSRHQFGPEKDV
FAPRFCKNINTTFQNLYKCPADDKSKVVRVLNLWQKNGVFKSEIIQPLLDLAAGIPPPSV
TPAVASTTAATVSSNTPGTPATPATPANVMQNLPDAWASISQLSNTDTIAAVAQLLQSPQ
GQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQLTAAATANTLNPLEQRLNFN
KKLLDRFEYEEEQDHSEETKKETSASQLPLVAETMNTSLFQQLAEQFQQQNFEQLRQQIM
EQQQTQQNATLDNQEVTFGSEQSVTPSQSSTHQQQEQEIRVEDPLEQQQQDMDIDAPDGQ
DLIEEEIFQHEEKKPLARSRSLTRSRSRSRSPRKKRSRSRSGSRKRKHRKRSRSRSKERK
RKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDITNLFEE
FGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSTGSFKMGSKIIKIAWALNKGVKPEYK
QFWDVDLGVTYIPWEKLKLDDLEGFSEGGMIDQETVNTEWESRNTEPVKENVIQPVTTES
TQPTSQGETFTQAVTMLPVQIPVTPTVSAISMVQPPAFPVSMSIPPPGFNPAIPPPPFLR
HSFNPSQPPPGYLPPPPPVVPPPVVGPSIPPVQTSLVCPPLSNTQDSTKDSPFGNLLSHI
GSGHSNLPTPSIPPGSMFNPIGTQPLSSGPGGSNDLGAPRTGSQTSTSETASTSGPGAQS
TVSTGPVLGLQPSTPAPGLPNLPPPNMVGPRIPGVLPLDVRPGMMPPSPGQRFPLLMPPQ
PNMPPQPNIPPQPNMPPSLSIDGPLHSGSRAPFPPVSSFSRLEGAFSRAAVPSSDSSTNA
SQGTADERRSTGNDHSFQRESMQQEGDRDYRFPPVDNSDTHGRRDQFGFGPDQRWGSRDF
DERERRAVPFGGPKGFHDDHERYGGRNFRFDGRSGPVWNRGFDQEVHRDLDDRSRPWERQ
RDRDDRDFGFRRDVNGNRFGRDREQDHWVPPRHRFDYFQGTTDHQKPDDRPRVNGDFSET
NSQTPNKELANNDSEVSVNLASPSDGSVEKDDLENQPVTENTDTEGT
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggaactcaatctggataagtgtgaggtgatgcacttgagcaagacaaccaagctcgtg
gttcatttgtatttaaatgtatatccacagtgtaaaccagaatacaaagtcccagggctg
tatgttatcgactcaattgtgcgtcagtctcgtcatcagtttggtccagaaaaggatgtg
tttgcacccagattttgcaagaacatcaatacaactttccaaaacttgtacaaatgtcct
gctgatgacaagagtaaagtagtgcgcgtactgaacttgtggcagaagaatggagtgttc
aaaagtgagattatacagccacttctggacctggcagcagggattccaccaccctctgtc
acccctgctgttgccagtactacagcagcaactgtgagcagcaacacaccaggaactcca
gccacccctgccactccagccaatgtcatgcaaaatttacctgatgcgtgggcctccatc
tctcagctgtcaaacacagacacaattgctgctgttgcacagcttctgcagagtccccag
ggtcaacagctccagcagttggtgcaaagtcttcagatgcaacagcaaaaacctcagcct
tctctgcttcaggctcttgatgctgggcttgtagttcaactacaggctcttacagcccag
ctgacagcagctgcaactgctaatacactcaatccactggagcaacgactcaattttaat
aagaaactccttgacagatttgagtatgaagaagaacaggatcattcagaggaaactaag
aaagaaacatctgcatcccagctacctcttgtagctgagaccatgaacacatcacttttt
cagcagctggccgagcaattccaacagcaaaactttgagcaacttcggcaacagataatg
gagcaacagcagacgcagcagaatgcaactttggacaatcaggaggtaacttttggatct
gaacagtcagtgaccccttcccagagcagcactcatcagcaacaagagcaagagatcaga
gtggaggatccacttgagcaacaacaacaggatatggatattgatgcacctgatggtcag
gaccttattgaagaagaaatctttcagcatgaagaaaaaaaacctttagcacgttcaaga
tctctgacacgctcaagatctcgttcaagatcacctcgaaagaaaaggtccagatcccgc
tcagggtctcgcaagcgcaaacatcggaaacgctctcgctcaagatcaaaagaaagaaaa
aggaagtcgtctcgatcttactccagtgaaagaagagcgagggagcgtgaaaaggaacgt
cagaaaaagggtctaccacctatccgttcgaaaacacttagtgtatgcagtactacacta
tgggttggtcaggtagacaaaaaggcaacacagcaagatataacaaatctctttgaggaa
ttcggccagattgaatcaataaatatgatacctcctcgaggatgtgcatacgtttgtatg
gttcatcgacaagatgcttttcgtgctcttcagaaactaagcactggatcctttaaaatg
ggctctaaaattattaagattgcttgggctttaaataaaggtgtaaaacctgaatataag
cagttttgggacgtggatcttggagttacatatattccgtgggaaaaattgaaattagat
gatttggaaggcttttcagagggaggcatgatcgaccaggaaaccgttaatactgagtgg
gagtctaggaacaccgagcctgtaaaagagaatgtgatccaacctgtaactactgaaagc
actcaaccaacgtcacaaggagagacattcacgcaagctgtcactatgctacctgttcag
atcccagtgactccaactgtttcagcgattagcatggtgcaaccaccagcctttcctgta
tcaatgtccatacctcctccaggcttcaacccagccattccaccacctccatttttacgg
cacagttttaatccttcgcaaccaccacccggttacctaccgccaccaccaccagttgtt
ccacctccagttgttggtccttctattccgccagtacaaacctctctagtttgtccgcct
ctttccaacacccaagacagtacaaaggattccccgtttgggaacctactttcacacata
ggctctgggcacagcaatctcccaactcctagtattccaccagggagtatgtttaatcca
attggcacacagcctctctcttctggtccaggtggatcaaatgacttaggggcaccacgc
acaggcagccaaacgtcaacatctgaaacagcatctacttctgggccaggagctcaaagt
acagtttcaactgggccagttctgggattgcaaccatcaacacctgcaccaggactaccc
aatttgccacctccaaatatggttggaccaaggatacctggagtgctcccactggacgtg
cgtcctggaatgatgccgccatcacccggacagcggtttccattgctgatgccacctcag
ccaaacatgccccctcagccgaatataccccctcagccgaacatgcccccttcattatca
attgacggacctcttcactcagggtccagagctccctttccaccagtaagttctttcagt
aggcttgaaggagcattttcaagagctgcagtccccagttctgacagcagtactaatgca
agccaaggtacagcagatgaaagaagatctactggaaatgatcattcttttcagcgagaa
agcatgcaacaagaaggtgatcgggattatcgcttcccaccagtggataacagcgacact
catggaagacgggatcaatttggatttggtcctgaccaaagatggggctcaagagatttt
gatgaacgtgagcgtcgtgccgtgccctttggcggccctaaaggttttcatgatgatcat
gaaagatatggtggaagaaatttcaggtttgatggaagaagtggtccagtatggaaccgg
ggttttgaccaggaagtccacagggatcttgatgatcgcagcaggccttgggaacgccag
agagatcgtgatgaccgagattttggctttcgccgagatgtaaatggaaaccgttttgga
agagaccgagagcaagatcactgggttcctcctcggcataggtttgactattttcaaggg
accaccgatcaccaaaaaccggatgataggcctcgggtaaatggtgatttctcagaaaca
aacagccagacaccaaacaaggagcttgcaaacaatgattctgaagtttctgtgaacctt
gcatctccatcagatggaagtgtggagaaggatgacttagaaaatcaacctgtaactgaa
aacacagataccgaggggacataa
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