Rhincodon typus (whale shark): 109914974
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Entry
109914974 CDS
T06055
Name
(RefSeq) autophagy-related protein 16-1-like isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04136
Autophagy - other
rtp04140
Autophagy - animal
rtp04145
Phagocytosis
rtp04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
109914974
04140 Autophagy - animal
109914974
04136 Autophagy - other
109914974
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109914974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109914974
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109914974
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
109914974
Others
Specific organelles associated proteins
Auto phagosome
109914974
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109914974
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
ATG16
WD40
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
WDR55
EIF3I
Beta-prop_WDR36-Utp21_1st
DSE1_N
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_ACSF4
Beta-prop_DCAF12
Beta-prop_NOL10_N
eIF2A
Beta-prop_SPT8
Beta-prop_HPS5
CFAP251_N
WD40_RFWD3
Uso1_p115_C
CCDC146_CC_N
Lectin_N
DUF4200
ASA1
Tup_N
FKBP15
DUF4472
NET2A
V_ATPase_I
Tricorn_N
Fez1
DUF1664
CCDC93_CC
TMA17_helical
Motif
Other DBs
NCBI-GeneID:
109914974
NCBI-ProteinID:
XP_020370170
LinkDB
All DBs
Position
13:62248839..62292398
Genome browser
AA seq
599 aa
AA seq
DB search
MATAAHGWRRNISEQLRLRDRLQRQAFEELIQAYNKLLEKSDLQTVLAERFQGEKYDLHN
RQDVSPGSDGARNETAHEIAQMRIHHQEELTELHKKRGELAQNVIELNSQLQQKDKEIHA
NESKMMEYEKQIQQLSNDCQELRNKLQELEQANQTLKDEYDALQITFTALEEKLRKTSDE
NRELISRWMAEKAQEANRLNAENEKDTWRRQAKLKKDLAEAAKEPLNIDPDDDIEVLGEE
GPDASGETSPVRATHRTSRRTSQTPGLLDSISSIFGKRSPTLHGTVTECPSVRTGPCNEM
RLPTMALHVFDAHDGEVNAVQFSPGSRVVVTGGTDRKVKLWEILSGKCELKASLTGSNAG
ITSLEFDSTGAYLLAASNDFASRIWTVDDSRLRHTLTGHSGKVLSAKFLLDNARVVSGSH
DRTLKLWDLSRKICTKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTESIVHEMELQ
GRITALDLNPERTELLTCSRDDLLKIIDLRANVIRQSFSAQGFKCGSDWTRVTFSPDGKF
VAAGSSDGILYVWGVESGKIERSLGKHHSSSVNAVSWSPSGEHVVSVDKGSRVVLWSEA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggcggcgcacggctggaggagaaacatcagcgagcagctgcggctccgggac
cgcctgcagcgtcaggccttcgaggagctgatccaggcgtacaataagcttctggagaag
tctgatctgcagactgtcctagctgagaggtttcagggggagaaatatgaccttcacaac
cgacaagacgttagtccaggctccgatggtgcacgtaatgagacagcacatgaaattgcc
cagatgcggattcaccaccaggaggaactcacggaactccacaagaaacgtggagagctt
gcccaaaatgtgattgaactcaatagccagttgcagcaaaaggacaaagaaatccatgca
aatgaatcaaagatgatggaatatgagaagcaaatacaacaactgagtaacgattgccag
gagctgagaaacaagctccaggagctggagcaagccaaccagactctgaaggatgaatat
gatgccctccagatcaccttcactgctcttgaagagaagctgcggaaaacctctgatgaa
aaccgggaactaatctcacggtggatggccgagaaagcacaggaggctaatcggttgaat
gcagaaaatgagaaggatacttggagacggcaggcaaagctgaaaaaggatcttgcggag
gctgctaaagaaccattgaatattgatccagatgatgatatcgaggtgctgggtgaagaa
ggacctgatgcatctggagaaacgtcacctgtgcgagcaacacacagaacctccagaagg
acttcgcagacacctggtctcttggattctatcagtagtatctttggaaaacgttcgccc
acgttacatgggactgtgaccgaatgccccagtgtgcgcacggggccatgcaacgagatg
cgacttcccaccatggcactgcacgtatttgatgctcatgatggagaggttaacgcagtc
cagttcagtccaggatctcgagtggtggtgactggtggcacggaccggaaggttaaacta
tgggagatcttgtcaggaaaatgtgagttgaaggcttcactcactggcagcaatgctggc
attaccagccttgaatttgacagcacaggagcatacctcctagctgcctccaatgacttt
gccagcagaatctggactgtcgatgattctcggctgcggcacacattgacaggacacagc
gggaaagtgctatctgcaaaatttcttctggacaatgcccgggtagtgtcaggaagccac
gatcggacactcaagctgtgggacttgagtcgtaagatctgtacaaagacagtgtttgct
ggttcgagctgcaacgatattgtttgcactgagcaatgtgttatgagtgggcacttcgac
aagaagattcgtttctgggacattaggacagagagtattgtgcatgagatggaactgcag
ggtcgtatcacagcactcgatctcaatccggaacgcacagagctactcacctgctccaga
gatgacttgttaaagatcattgacctacgtgcgaatgttatcagacagtccttcagtgca
caaggattcaagtgtggatcagattggacaagggtaacgttcagcccggatgggaaattt
gttgctgccgggtcttcagatggaatactttacgtgtggggtgttgaatctgggaagata
gaaagaagcctgggaaagcaccacagctcttctgtaaatgcagtgtcctggtccccgtct
ggagaacatgtggttagtgtggacaaaggaagccgtgtggtactttggtcagaagcttaa
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