Rhincodon typus (whale shark): 109914975
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Entry
109914975 CDS
T06055
Name
(RefSeq) uncharacterized protein LOC109914975 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04136
Autophagy - other
rtp04140
Autophagy - animal
rtp04145
Phagocytosis
rtp04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
109914975
04140 Autophagy - animal
109914975
04136 Autophagy - other
109914975
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109914975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109914975
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109914975
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
109914975
Others
Specific organelles associated proteins
Auto phagosome
109914975
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109914975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG16
HTH_Tnp_Tc5
CENP-B_N
NET2A
Rab11-FIP3
HALZ
CLIP1
STX6_10_61_N
HTH_23
RACo_linker
DUF4472
HTH_28
EXOC6_Sec15_N
DUF641
CC_Bre1
GPS2_interact
HTH_Tnp_ISL3
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
109914975
NCBI-ProteinID:
XP_020370172
LinkDB
All DBs
Position
13:62231305..62245181
Genome browser
AA seq
540 aa
AA seq
DB search
MPSSQTVGKLGAAVYGRTPGKMAERERLERQSLGALLGGYSKLMDKCDLQAALTDKLQGE
KCDQQTTRPALQRTQNEMLLQKGTQTWIQQQDELMEFHKNRGDLTQSMIELNSRLQQKDR
EILTNETKMVEYHKRIKRLEVECQELRTNLQDLERANHTLKNEYNALHITFSTLEERLQK
MAVENHELITRWLSEKTQGTNRLNTENEKDSRPFIVLGGIGSLPVIPTNHKRTDLPLAEK
VKVVAALQGPKASYASVAKMFNISKSQVGRISQNRERILEEWRQNANPNRKRKRKGKDIE
VEDALLLWFQHAVAEGVRISGPMLKTKAKEFAEELRHDDFEPTDGWLSRWKARNNIVFKK
DSNEQHDCESSVACGQTPDKPEVEARVTDIGHNVTLLDAIQMLYRAYGNMEQTPCADPHH
GDQLKKHAICLGPGFPGGDLGSANSCPQLLPAKQEVLSGLQPKSEDSCVTSKRPRLEAKV
QERGVDGTSSSLATGITNNEVLECVSKLGNWLQLQGPSGIYEPMLCMLRDMQTAVATFLR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgcctagcagtcagactgttgggaagctcggcgccgctgtgtatggaaggaccccgggg
aagatggcggagcgggagcggctggagcgccagtctcttggagcgttgctcgggggctac
agtaagctgatggacaaatgcgacctgcaggcagctctgactgacaaacttcagggtgaa
aaatgtgaccagcagactaccagaccagccctgcaaaggacgcagaatgaaatgttgctg
caaaaaggcacccagacctggatccagcaacaggatgaattgatggagttccacaaaaat
cgtggagatctcacacaaagcatgatcgaactcaatagcagactacagcaaaaagataga
gaaatcttgaccaacgagacaaaaatggtggagtaccacaaacgaataaagaggctggag
gtggagtgtcaggagctgcggactaacctgcaggacttggagcgagccaatcacacactg
aagaatgaatacaacgctctccacatcaccttcagcacccttgaagaacgactgcagaag
atggccgttgagaaccatgagctaatcacacgatggttgagtgagaaaacacagggcacc
aacagactgaatacagagaatgaaaaggattccagaccatttattgtcctgggaggaata
ggaagcttgcctgtgatacccacgaatcacaagcgcacggacctgccgcttgctgagaag
gtgaaggttgtcgcagctttgcaaggcccgaaagcttcctatgcctcggtggccaagatg
ttcaacatctccaagagccaggtgggacgcatcagccagaacagggagaggatcctggaa
gaatggcgacagaatgccaatcccaaccgcaagaggaagaggaaagggaaggacattgag
gtggaagacgctcttctcttgtggttccagcatgctgtagctgaaggagtccgcatctcc
ggccccatgctaaagacaaaagcaaaggagtttgcggaggagctgcgtcatgatgacttt
gagccaactgacgggtggctgtcgcgatggaaggcacggaacaacattgtctttaagaag
gactccaacgagcagcatgactgtgaaagctctgtggcatgtggacagactcctgacaaa
cctgaggtcgaggccagagtcaccgatattggccataatgtgaccttgctcgatgcaatc
caaatgctatatcgggcatatggaaacatggagcagaccccctgcgctgacccacaccat
ggagaccagttgaaaaagcatgcaatctgcctgggtcccggatttcctgggggcgatctg
ggttcggctaattcctgtccccaattgctcccagcaaaacaggaggtgctgtctggcctg
cagcccaaatctgaggacagttgtgtgacatctaagaggcctcgcctggaggccaaagtg
caagagcgtggggttgacggaacgtcatcgagcttagccactggcatcaccaacaatgag
gtgctagagtgtgtgagcaagctgggaaactggcttcagctgcaaggaccgtcaggaatt
tacgagccaatgctttgcatgctacgggacatgcaaactgcagtggcaactttcctgagg
tag
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integrated database retrieval system
