Rhincodon typus (whale shark): 109915714
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Entry
109915714 CDS
T06055
Symbol
lamc1
Name
(RefSeq) laminin subunit gamma-1
KO
K05635
laminin, gamma 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04510
Focal adhesion
rtp04512
ECM-receptor interaction
rtp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109915714 (lamc1)
04518 Integrin signaling
109915714 (lamc1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109915714 (lamc1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_N
EGF_laminin
EGF_LMN_ATRN
Laminin_B
Alanine_zipper
Motif
Other DBs
NCBI-GeneID:
109915714
NCBI-ProteinID:
XP_048457931
LinkDB
All DBs
Position
10:25915849..26141703
Genome browser
AA seq
1618 aa
AA seq
DB search
MALGGPGTRKKGVPSELKRSPCPDNMRWSLRLALLGCLLLQCRAAMDECYDETSRAQRCM
PEFVNAAFNVTVVASNTCGSPPEEYCVQTGVTGVTKSCHICDSSDPRLHHDAVYLTDYNN
QADTTWWQSQTMLSGIQYPNSISLTLHLGKAFDITYVRLKFHTSRPESFVIYKRTNEDGP
WIPYQYYSGSCEKTYQKKNRGFIRTGEDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSA
YNFDNSPVLQEWVTATDIKVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCHGH
ASECIKNEFNKLVCNCKHNTMGVDCESCQPFYNDRPWRRATAENPNECLSCNCHGKSAEC
YFDSELYRATGHGGHCRNCIENTDGPNCERCRDDFYRQGPEAQCLPCNCNPVGSISTQCD
IYGRCSCKPGVMGDKCDHCQPGYHSLTEAGCRPCACNPAGSTEECIVDTGRCMCKNNVEG
FNCERCKPGFFNLDPRNPHGCTACFCFGHSSVCSKAEGYSIERIASSFDTGNDRWRAEQR
DGTEVLLQWSPVSRDISVVSNDYFPVYYIAPANMLGNQLMSYGQNLSFTFYVDKRDTRLS
AEDLVLEGAGLRVTVPLIAQGNQYPTESPQKYVFRLHEVTSYPWRPQLSSFEFQRLLHNL
TAIKIRGTYSENSAGHLDDVTLLTARPGSGSPAEWVEQCTCPAAYRGQFCEQCAPGYRRE
DPRLGAFSSCVPCTCNEHSDTCDPESGECYCRDNTAGSNCERCRDGYYGDPTVGSSEDCR
PCPCPTGSSCAMVPKTRDVVCTNCPKGTTGKRCELCDDGYYGDPLGSEGSVSPCKPCHCS
DNIDPNAVGNCNRLTGECLKCIYNTDGFYCDKCKDGFYGNALNPIPSEKCKACNCSRYGT
VDQQRNCNQVTGLCECLVHVVGRDCSQCELGYYNLLSGQGCQRCDCNPIGSINGQCDARN
GQCECQPGVVGRQCDTCEPYHFGFGQDGCKPCDCDREGSGSLQCKEDGKCDCKEGFVGIH
CDQCEENYFYNRTRPGCQECPTCYRLVKDKVTEHRQKLKDLEDLIANLGTSQDTVSDKAF
EERLKEAERTIMDLLRDAENMRDVDKSLMDRLAEINNTLSTQWGRLQNIKDTVDNTQQLA
ELSNNRIQDAEKVISNARTELEKAKEILGNVSIATPDSSADPNNMTLLAEEARNLAERHK
NEADVIEQIAKNANDTSTEAYELLRKTLAEESEITNAIDDLNQKYDAAKNMSRELEKQAT
KVHSEAEEAGSKALQIYANLTSLPVVDTKSLENEAEKIKKDAADLDGLIDRKLNDYKDMR
DDLKAKETEVKSLLEKGKTEQQTADQLLARADAAKALAEDAAKKGKATLQEAQDILKNLQ
DFDKRVNDNKTAAEEALKKIPGIRKTIDEANAKTKQAEDALGNARMDASEAKKKAEDAKK
IAEMLQEDAAKTKQDADDTFNDAMTLESEVSNMMNRLKEAEDELVGKKNEADQDMMMADM
ASQAAKEADEQARKAKKAVQGVLNTINKLLGELGQLDNVDVNRLGEIENILKKAKDQMED
SDLERKLADLEKAEKEQANAIISYEQDIEDILKDIKNLEDIKQTLPPGCYNTQSLETP
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgggaggacctggaactcggaagaaaggtgtgccgagtgaactgaagcgttcc
ccgtgcccggacaacatgcggtggagcttgcggctcgccttgctcggctgcctgctcctg
caatgccgggcagccatggacgaatgctacgatgaaacttcacgggctcagcgttgcatg
cccgagttcgtcaatgccgctttcaacgtgaccgtggtggccagcaacacttgcggctcc
cccccagaagaatattgcgttcagaccggggtgactggggtcaccaagtcttgccacatt
tgcgactccagtgaccctcggctccaccacgacgccgtctatctgaccgattacaataac
caagccgataccacttggtggcaaagtcagacgatgctttctgggatccagtaccctaat
tctatcagcctgactttgcacttggggaaagcatttgacattacgtatgtaagactgaaa
ttccacacaagtcggcctgagagttttgttatttataaacgaactaatgaagatgggcct
tggataccttaccagtattacagtggatcgtgtgagaaaacgtaccagaaaaaaaatcgt
gggtttatccgaacaggagaggatgaacagcaggcgctgtgcacagatgaatttagtgat
atatcgcccctcactggaggaaatgttgccttttctactctggaagggaggcccagtgct
tacaattttgacaacagccctgtgctacaggaatgggttacagcaactgatatcaaagtg
accttgaatagattgaacacttttggagatgaggtctttaatgacccaaaggttctgaag
tcttactattacgccatttcggactttgcagttggtggaaggtgtaagtgtcatggccat
gccagtgaatgtataaagaatgaattcaataaactggtctgcaattgcaaacacaacaca
atgggagtggattgtgagagctgccagccattctacaatgaccgaccttggcgcagagct
acagcagaaaacccaaatgagtgtctgtcttgcaattgccacggcaaatctgcagaatgt
tacttcgactccgagctctaccgagccaccggacacggtgggcactgccgcaactgcatt
gagaatactgatggtcccaactgtgagaggtgtcgggatgatttctaccgccagggcccg
gaagcccaatgtctgccgtgcaattgtaacccagtgggttcaatcagcacacaatgtgat
atctatggccggtgcagctgcaaaccaggagtgatgggagataaatgtgaccattgccag
cctggctaccactcactaactgaagcaggatgcagaccgtgtgcttgtaaccctgctggc
agcaccgaagaatgcattgtcgatacagggcgttgtatgtgcaagaataatgttgaggga
ttcaactgtgagagatgcaaaccaggatttttcaacttggacccccggaaccctcatggc
tgcacagcctgcttctgctttggtcattcatctgtttgtagcaaagctgagggctatagt
atcgagaggatcgcatcaagctttgatacaggcaatgacagatggcgggctgagcagcga
gacggtactgaggtcctgcttcagtggtccccagtgagccgtgatatctctgtggtctct
aacgattatttccctgtttactacattgctcctgcaaatatgttggggaatcagctgatg
agctatggtcagaacctctctttcactttctatgtggacaagagagacacacgtttatca
gccgaggatctagtgctggaaggagcaggcctgagagtaacagttccactgatagctcag
ggaaatcagtacccgacagagagcccacagaaatatgtcttcaggcttcatgaagtaaca
agttatccgtggaggccgcagctttcttcttttgaatttcaaaggcttctccacaacttg
acagctatcaagattcgaggcacatacagtgagaatagtgctggacacttggatgatgta
actctgctcactgctcgtcctggctctggatctcctgctgaatgggtagaacaatgtacc
tgcccagctgcataccggggccagttctgtgaacagtgtgcaccgggctacaggagggag
gatcctaggcttggagctttcagttcctgtgtgccctgcacctgcaatgaacatagtgat
acctgcgatccggaaagtggtgaatgttactgcagagacaatacagcaggatcaaactgt
gagcggtgtagggatggttactatggtgatcctacagttggtagctcagaggactgtcgt
ccgtgcccttgtccaactggttcaagctgtgccatggtgccaaaaaccagggatgtagtg
tgtaccaactgccctaaaggaactactggtaaaaggtgtgaactatgtgatgatgggtac
tatggtgaccctttaggaagtgaggggtctgtgagtccatgtaaaccatgtcattgcagt
gacaacattgatccaaatgctgtggggaactgtaatcggctgacaggagagtgtttaaag
tgcatctacaacactgatggattctactgtgacaaatgtaaagatggattttatggaaat
gcattaaacccaattccatcagaaaaatgtaaagcttgtaactgttctcgatatggcact
gtggatcagcaaaggaactgcaaccaagtcaccggtctgtgcgagtgcttagttcatgtc
gtgggcagggattgtagtcagtgtgagttaggctattacaatcttctgagtggccagggc
tgtcagaggtgtgactgtaaccccattggttccattaacggccagtgcgatgcccgcaat
ggacaatgtgaatgtcagcctggtgttgttggtcggcagtgtgatacatgtgaaccgtat
cactttggatttggccaggatggatgcaaaccctgtgattgtgaccgtgagggctctgga
tctcttcagtgcaaggaagatggaaagtgtgactgtaaggaaggatttgtgggcatacac
tgtgaccaatgcgaagaaaactatttctacaatcggacaagacctggctgccaggagtgt
cctacatgctataggctggtgaaagataaggtaactgaacatagacagaagcttaaggac
ttggaagatttaattgcaaaccttggaacaagccaggacacagtgagcgacaaagctttt
gaagaaagactcaaggaagctgaaagaaccataatggacttgctgagggatgctgaaaac
atgagagatgtagacaaaagtcttatggaccgtttggctgaaattaataacaccctgtcc
actcagtggggacgacttcaaaatataaaagatacagtagataacacacaacagttggcc
gagctatccaataatcgtatccaggatgcagagaaagtaatttcaaatgctcggacagag
cttgaaaaggccaaggaaatcttgggcaatgtgtcaatagcaactcctgattccagtgct
gatccaaataatatgacacttctggcagaagaggctcgtaaccttgctgagagacataaa
aatgaagccgatgtgattgagcagatagccaagaatgctaatgacacctcaactgaagct
tatgagctgctgcgtaaaacattagcagaagaaagtgaaatcaccaacgcaattgatgac
ttaaaccaaaagtatgatgcagcaaaaaatatgtccagggagctggaaaaacaagctacc
aaagtacacagtgaggcagaagaagctggcagtaaagcattacaaatttatgctaatctg
acgagtttgcctgttgtggacaccaagagtttagagaatgaagcagaaaagattaaaaag
gatgcagcagacttggatggtttgattgacagaaaattgaatgattacaaagacatgcgg
gatgacctgaaagcaaaggaaactgaagttaagagccttttggaaaaggggaaaactgaa
cagcagactgctgaccagttgctcgcccgtgcagatgcagctaaagccctggctgaagat
gctgccaagaagggaaaggctaccctgcaggaggctcaggatattctgaaaaatttgcaa
gattttgacaagagagtgaacgacaacaagacagcagctgaagaagctttgaaaaagata
ccaggcatcaggaagaccattgatgaagccaatgcaaagacaaaacaggctgaggatgca
ttgggtaatgcaagaatggatgcatctgaagccaaaaaaaaggctgaagatgcaaagaaa
attgcagaaatgttacaggaggatgctgctaaaacgaagcaggatgctgatgacaccttt
aatgatgccatgaccttggaaagtgaagtcagtaacatgatgaatcgacttaaagaagca
gaggatgaacttgtggggaagaagaatgaagcagaccaagacatgatgatggcagatatg
gcttctcaagctgcaaaagaggcagatgagcaggcaagaaaggccaaaaaggctgtgcag
ggtgtgctaaataccatcaataagttgttgggagaactgggtcaacttgataatgtagat
gttaaccggcttggagaaattgagaacattctaaagaaagccaaggatcagatggaggat
agtgatttagaacggaagttggcagatctggaaaaggctgaaaaggagcaggctaatgcg
ataatttcctatgagcaagacattgaagatatcctgaaggacatcaaaaacctagaggac
atcaaacaaacattacctcctgggtgttacaatacccagtctctggagaccccatag
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