Rhincodon typus (whale shark): 109915757
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Entry
109915757 CDS
T06055
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109915757 (ddx1)
03016 Transfer RNA biogenesis [BR:
rtp03016
]
109915757 (ddx1)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109915757 (ddx1)
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109915757 (ddx1)
Transfer RNA biogenesis [BR:
rtp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109915757 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
PFK
DUF4882
Motif
Other DBs
NCBI-GeneID:
109915757
NCBI-ProteinID:
XP_020371015
LinkDB
All DBs
Position
5:107852842..107985020
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAEAVEQMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDHEEGKKGGKTAVKTGGAVFSKWQMNPYDRGSAFAIGSDGMCCQSREVKEW
HGCRSTKGVNKGKYYYEVHCHDQGLCRIGWSTSQAALDLGTDKFGFGFGGTGKKSHCKQF
DSYGEEFTMHDTIGCYIDLDKGDVKFSKNGKDLGRAFDIPAHLKNQAFFAACVLKNAELK
FNFGEEEFKFPPKDGFTALDKAIDGHVVKSPHTGTAQVTQTKNLPNAPKALIIEPSRELA
EQTLNNVKQFKKNVSNPKLRELLIIGGVSAKDQLAVLEQGVDIVVGTPGRIDDLVSTGKL
NLSQVRFLVLDEADGLLTQGYSDFISRIHSQIPQVTSDGKRLQVIVCSATLHSFDVKKLS
EKIMHFPTWVDLKGEDSVPETVHHVVLRVNPKTDRYWEKIARHIRTDEVHAKDNTRPGAS
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQMGGGPDRRGHQF
SCVCLHGDRKPNERKQNLERFKRADVKLLICTDVAARGIDIHGVPFVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVATEKEKVWYHVCPNRGRGCYNTRLKDQGGCTIWYNEVQLLS
EIEEHLNVIITQVEPDLKIPVDEFDGKVVYGKKRAAGGGSYKGHVDALASTVQELAALEK
EAQSSFLHFGYLPNQLFRRF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttttcagagatgggtgttatgccggaaattgcagaggcagtagagcagatg
gactggcttcttccaacagatattcaagctgaatctatacctttgattctgggtggtggc
gatgtgctaatggcagcagaaactggcagtggcaagaccggagcgtttagcataccggtt
atacagattgtatatgaaacactcaaggaccatgaagaaggcaaaaaagggggaaagaca
gctgtcaagactggtggtgcagtatttagcaaatggcagatgaacccctatgatagagga
tcagcctttgctattggatctgatggtatgtgttgtcagagcagggaagtaaaagaatgg
catggatgcaggtccacaaagggagtgaacaagggcaaatattactatgaagtacattgc
catgaccaaggcttgtgtagaattggttggtctacctcacaggcagcgcttgatttgggt
actgacaaatttggctttggatttggtggcactggaaagaagtcccattgcaaacagttt
gacagctacggagaggaatttaccatgcatgataccattggatgctacattgatcttgac
aaaggagatgtaaagttttcaaaaaatgggaaagaccttggtcgtgcctttgatattcct
gcacacttaaagaaccaagccttctttgctgcttgtgttttaaagaatgctgagcttaaa
tttaactttggtgaggaagaattcaagttccctccaaaagatggttttacagcactagac
aaagctatcgatggccatgttgtaaagtcaccacatactggtacagcacaagtgactcaa
actaaaaacttaccaaatgctccaaaggcactcattattgaaccatcaagggaactggct
gaacaaaccctgaataatgttaagcagttcaagaaaaatgtttctaatcccaaactaagg
gagcttctgattattggaggtgtttctgcaaaagatcaactagctgtcctggaacaaggt
gtggatattgttgtcggaactcctggaagaatagatgaccttgtctcaacaggaaagctg
aatctatcccaagttaggttcttggtgttggatgaagctgatggactgcttactcaaggc
tactcagacttcatttcaagaatacattctcagatccctcaagtgacatctgatggcaaa
aggttgcaggtcattgtttgctctgccacactgcattcatttgatgttaagaagctatca
gagaagatcatgcatttccccacctgggtagatcttaagggagaagattctgttcctgag
accgtacatcatgttgttctaagagttaatccaaaaactgatcgttactgggagaaaatt
gcaaggcatatccggacagatgaagtccatgcaaaagataatacaagacctggtgccagt
actccagagatgtggtcagaagctattaaaatactgaagggggaatatacagtccgtgca
atcaaagaacacaagatggaccaagcaatcattttttgtaggacaaagcttgactgtgat
aacatggaacagtactttattcagatgggaggaggaccagatagaagggggcatcaattc
tcttgtgtctgcttacacggtgatagaaaaccaaatgaacgaaagcaaaacctggaaaga
ttcaagagagcagatgtaaaactcctgatctgcactgatgttgctgccagaggaattgac
attcatggggttccttttgtgattaatgtgactctccctgatgaaaaacaaaactatgtt
catcggattggcagagtgggcagagctgacaggatgggtctagccatttccttggttgca
actgagaaagagaaggtttggtaccatgtatgtccaaatcgtggaagaggttgctataac
accagacttaaggatcagggtgggtgtactatatggtacaatgaagtgcagctgttgtct
gagattgaagagcacttgaatgtcatcatcactcaagttgagcctgacctgaagatacca
gtggatgagtttgatggcaaagtagtctatggaaagaaaagagcagcgggaggtgggtca
tacaagggccacgttgatgctttagcatctacagtacaagagttggctgcccttgaaaag
gaggctcaatcctctttcttacattttggctatcttcccaatcaacttttcagacgcttt
tga
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