Rhincodon typus (whale shark): 109916126
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Entry
109916126 CDS
T06055
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109916126
04121 Ubiquitin system [BR:
rtp04121
]
109916126
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
109916126
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
109916126
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
ZBED1_RNase-like
ZBED1_RNase-like_helical
Motif
Other DBs
NCBI-GeneID:
109916126
NCBI-ProteinID:
XP_020371419
LinkDB
All DBs
Position
6:11306428..11336312
Genome browser
AA seq
661 aa
AA seq
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MEHKTPEGSNSDLKLVCHPRAKSKVWKYFGFDTDAEGCILQWKKIYCRVCRAQIAYSGNT
SNLAYHLEKNHPSEFHQVVKSNAEQAREPFTSNVLKSESESTYLTHQDPIFKSYYSQDSK
RHQELTLMVTNFICEGLYPVSVVEEQTFKKLLKMADPRYELPNRKYFSTKAIPERYHTVR
TAVEKELAAAVWCGLTADLWTVQARNRYYMSLTAHFLGGLGSGTNTLKFTSKCLATFEVV
DEYTTENLAHALVESFREWGISKNVLGATTSSDSENVVNACSLLNLPVHMPCFGHAINLA
INRALQLPKLCILLLKCDKLAEYFKVTPRAAYMLCEKQKQQYLLQHQLVNDCSTWATTLS
MLQRLREQQTAIAAVLFEDNMNYQLMLEAGEWNTIDGLVELLQPFQQATEMMGKSKYPII
SMVKPLLHVLLNSTLKVDDSDSHVLSAVKETIAKELSEAYGLSQELELFLHSATFLDPRY
KKVPFLSAAQQKQVESKVLEEATALLEKGSESFARAEGGFALEEPPLKKRTVSVQPYSTG
SINFMLAEIFGQAGSRDEGQDGWRAQVVEELNNFKSQKVLELNEDPLIWWSDRVALFPTL
SKLLQKYWCIPATSLPSERLFSAAGNLVNAKRNQLAPAEVDRLLFLYENTRVDREVVADD
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggagcacaaaaccccagaaggttctaactctgacctaaagctggtctgccacccgaga
gcaaaaagtaaagtttggaagtattttggctttgatactgatgctgaaggatgcatactg
cagtggaagaagatctattgcagagtttgtagggctcaaattgcttattcaggaaacacc
tccaaccttgcctaccaccttgaaaagaatcatcccagtgaattccaccaagttgtaaag
agcaacgctgagcaagctagggagccgttcacctccaatgttttgaaatctgaatctgaa
agcacgtacctgacccaccaagatccaatcttcaagagctactacagccaagatagcaaa
cggcaccaagaattgaccttgatggttaccaacttcatctgcgaaggcctgtatcctgtg
tctgtggtagaagagcaaactttcaagaagctgcttaaaatggctgacccaaggtacgag
ctccctaacaggaagtatttctctaccaaagctatcccagagcggtaccacactgtccgg
accgctgtggagaaggagttggctgcggcagtgtggtgtgggttgactgctgatctctgg
actgtgcaggctcgaaaccgatactacatgtctttgactgctcacttcttaggtggcttg
ggcagtggcaccaacaccctaaagttcacttccaagtgtctagccacgttcgaagtggtg
gatgagtataccacggagaacttggcccatgcgcttgttgagtccttcagagaatgggga
atcagcaaaaatgtgttgggcgctactaccagtagcgacagtgaaaatgtagtgaatgct
tgctcccttctgaatctccctgtgcacatgccatgttttggtcacgcaatcaacctggca
ataaaccgagcactccaactccctaaactctgcatccttcttctgaagtgcgataaactg
gccgagtactttaaagtgacaccaagagcagcgtacatgctgtgtgagaagcaaaagcaa
cagtatttgttacaacatcaactggtcaatgactgtagtacttgggcaaccaccctctct
atgttacagcggctgagggagcagcaaacagcaattgctgctgtgctttttgaggacaac
atgaattaccaattgatgctggaagccggtgaatggaacaccatagatgggttggtggag
ttactgcagccatttcaacaggctactgagatgatgggcaagtcaaagtacccaatcatt
agcatggtcaaacctctgctgcacgtcctcttgaattcaacgctgaaagttgatgattcg
gactctcatgtgctcagtgctgtgaaggagaccattgccaaagagttgtctgaagcatat
gggttgtcccaagagctggaactgtttctccactccgcgacatttctcgatccaaggtac
aagaaagttccattcctttcagctgcacaacagaaacaggttgagagcaaggtcttggag
gaagctactgccctcttggagaagggcagtgagagctttgcaagagcagagggaggcttt
gcccttgaagagcctcccctgaaaaaacgaacagtatcagtgcagccctacagcactggg
agcatcaacttcatgttggcagagatcttcgggcaggcgggcagcagagatgagggccaa
gatgggtggcgtgcccaggttgtggaagagctgaacaacttcaaatcacagaaggtgttg
gaactgaatgaagatccgcttatctggtggtctgaccgtgtggctttatttccaaccttg
agcaaactgctgcagaaatactggtgcattccagctaccagcctcccctctgagcgcctg
ttcagtgcagcagggaatctggtgaatgccaagcgaaaccagctggccccggcagaggtc
gatcgactcctgttcctgtacgagaacaccagagtcgatcgggaggtggttgcggatgat
gattga
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